Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0385
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   1.2  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   4.8  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    25   8.4  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +2

Query: 266 DAANSIMGIVVENIEPHIHWKPQLIDGILKYGDRVHTMSLPRVLLRQD 409
           +AA+  +  +V + + HI    Q+I  +LKY D+V++ S  +V + ++
Sbjct: 116 EAAHRFLSSLVNSWKDHIV-SMQMISSVLKYLDKVYSKSADKVPVNEN 162


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 275 NSIMGIVVENIEPHIHWKPQLID 343
           N++M I   N  PH +W P  +D
Sbjct: 355 NNVMNIRQFNCSPHPYWLPNFMD 377


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 347 ILKYGDRVHTMSLPRVLLRQDYAPTRL 427
           IL  GD +H+ ++P + ++ D  P+RL
Sbjct: 174 ILTSGDVIHSWAVPSLGIKCDCIPSRL 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,669
Number of Sequences: 5004
Number of extensions: 27397
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)