Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0385
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi...    30   1.00 
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ...    28   3.0  
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    28   3.0  
At1g01730.1 68414.m00092 expressed protein                             28   3.0  
At4g32330.2 68417.m04600 expressed protein                             28   4.0  
At4g32330.1 68417.m04599 expressed protein                             28   4.0  
At2g38330.1 68415.m04709 MATE efflux family protein low similari...    27   5.3  
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f...    27   9.3  

>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1052

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 266 DAANSIMGIVVENIEPHIHWKPQLIDGILKYGDRVHTMSLPRVLLRQDYAP 418
           DAA  +  +V   I+P++ +   LID  +K G+ +   +L + ++R+   P
Sbjct: 766 DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVP 816


>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 500

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 292 SGREHRTSHPL-EAAADRRNPQVRRQGPHDVSAQSSAPPGLRPNEII 429
           S + H  S  L      R+NP++ ++ P  V +  S PP   P+  I
Sbjct: 192 SAKNHTQSKKLYPETVTRKNPEIEQKSPAAVESSPSLPPSSPPSVAI 238


>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 260 HQDAANSIMGIVVENIEPHIHWKPQLIDGILKYGDRVHTMSLPRVLLRQDYAPTRL 427
           H+ A  S   +  E I+P +     ++D   + GD    M + +++LR+    TR+
Sbjct: 501 HEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRI 556


>At1g01730.1 68414.m00092 expressed protein
          Length = 224

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 247 IGTRSPGRGELYNGYSGREHRTSHPL 324
           I +  PG   +Y+G S  E+R+SHP+
Sbjct: 186 ITSGGPGTEPVYSGMSKEEYRSSHPI 211


>At4g32330.2 68417.m04600 expressed protein
          Length = 436

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 283 NGYSGREHRTSHPLEAAA-DRRNPQVRRQGPHD-VSAQSSAPPGLRPNEIIDQFHVT 447
           NG      +T++PL++ + + R  QV +QG HD   A+S+    ++P     Q H T
Sbjct: 122 NGSVAPNVQTTNPLKSKSFNGREAQVTKQGKHDSAPAESADGEKVKPKSQKKQAHET 178


>At4g32330.1 68417.m04599 expressed protein
          Length = 437

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 283 NGYSGREHRTSHPLEAAA-DRRNPQVRRQGPHD-VSAQSSAPPGLRPNEIIDQFHVT 447
           NG      +T++PL++ + + R  QV +QG HD   A+S+    ++P     Q H T
Sbjct: 122 NGSVAPNVQTTNPLKSKSFNGREAQVTKQGKHDSAPAESADGEKVKPKSQKKQAHET 178


>At2g38330.1 68415.m04709 MATE efflux family protein low similarity
           to enhanced disease susceptibility 5 [Arabidopsis
           thaliana] GI:16589070; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 521

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
 Frame = +2

Query: 179 PHQPRPSFGQRKTGTRRGILFRASERDHQDAANSIM--------GIVVENIEPHIHWKPQ 334
           PH+    FG   +  RR I+ ++S RD   A ++           +  +N   H H KP 
Sbjct: 12  PHRSPSRFGNPNSSIRRTIVCKSSPRDESPAVSTSSQRPEKQQNPLTSQNKPDHDH-KPD 70

Query: 335 LIDGILKYGDRVHTMSLPRVL 397
              GI K G  + +++LP  L
Sbjct: 71  --PGIGKIGMEIMSIALPAAL 89


>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
           family protein similar to SP|P36419 Aspartyl-tRNA
           synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
           (AspRS) {Thermus thermophilus}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 664

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 373 VDPVSVLEDSVDQLRLPVDVRFDVLDHYTH 284
           V PV+ +  ++D+LRL V    D++DH  H
Sbjct: 479 VGPVTSVNKTLDRLRLFVAHDMDLIDHSKH 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,576
Number of Sequences: 28952
Number of extensions: 152754
Number of successful extensions: 462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)