Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0382
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    29   0.52 
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    27   2.1  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    27   2.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.8  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 264  FEVT-LSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSG 377
            FEV  LS FPSD   T   +ER+     R GTAVF+S+G
Sbjct: 1371 FEVNGLSHFPSDIEDT---IERSHPRIARGGTAVFQSAG 1406


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 506 GSRFLISVIFNTENEKHRSNSELQY*AASRRHF 408
           G++   SVI+    + HR +S   +   SRRHF
Sbjct: 354 GNKLFYSVIYLAPGDYHRFHSPADWVIESRRHF 386


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 535 RALHDFAGLPAPVF*LALYLTRKTKNTVRTASYNIKRPVADISQH 401
           + L+DF  L  P +  +++ TR+  + +     NI   +  +SQH
Sbjct: 147 KVLNDFVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQH 191


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 432 LSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEE 298
           +S Q     N +T   NS +++       AE SST  + PY S +
Sbjct: 155 ISSQQKFHGNDKTLEKNSAKATINKSNSTAETSSTATVEPYDSND 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,224
Number of Sequences: 5004
Number of extensions: 42662
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)