Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0382
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    34   0.067
AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...    34   0.067
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    29   2.5  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    29   2.5  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   4.4  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    28   4.4  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    27   7.7  
AC006708-5|AAF60428.2|  254|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 510 NPAKSCKARGSNLRVHF 560
           N  KSCKARGS+LRVHF
Sbjct: 12  NSTKSCKARGSDLRVHF 28


>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 510 NPAKSCKARGSNLRVHF 560
           N  KSCKARGS+LRVHF
Sbjct: 12  NSTKSCKARGSDLRVHF 28


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -1

Query: 334 LNARSTSILVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 155
           +++ +++I +  +S  +  S T+ A   L  + ++T   T A NG   S  G+  +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232

Query: 154 TARRAYSKARMACDTGGKASWLLKAW 77
            +    S    A     K+  L   W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 TLSPFPSDAPLTSMDVERALSFAPRRGTA 359
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 TLSPFPSDAPLTSMDVERALSFAPRRGTA 359
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 220 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 95
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 329  VELRSASWHRGLQELWR 379
            VE R+ASW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 329  VELRSASWHRGLQELWR 379
            VE R+ASW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 476 NTENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATTRSEAQRALY 318
           N+ENEK R+  E +      R     E +QR  + A  +R      E + A Y
Sbjct: 155 NSENEKERNRREREEQQTKERERRLEEEKQRRDAEAEAERRRKEEEELEEANY 207


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 450  EQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRSGTET 277
            E+R  +L+GQSP F  +R       +   R R  +A++   +A+     E R+   +T
Sbjct: 1383 EERSGLLAGQSPDFSEVRAQIEEENRMKERSRKREAKK---KAVEKEKKEHRKEPKKT 1437


>AC006708-5|AAF60428.2|  254|Caenorhabditis elegans Hypothetical
           protein Y110A7A.11 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = -2

Query: 510 YRLPFFN*RYI*HGKRKTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSS 331
           YR      + +   + K+  E+R+ ++      FP+++ T A+S   +     +D E+ S
Sbjct: 60  YRQEVLQLKLLAEAESKSSAEERLKVIEKIPRVFPDVQVTVADSKNDN-EAESYDFEKES 118

Query: 330 TRALR 316
              LR
Sbjct: 119 AAGLR 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,266,152
Number of Sequences: 27780
Number of extensions: 248228
Number of successful extensions: 728
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)