Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0382
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein... 35 0.047
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 34 0.063
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 32 0.25
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 31 0.44
At2g32140.1 68415.m03928 disease resistance protein (TIR class),... 31 0.58
At5g63540.1 68418.m07975 expressed protein ; expression support... 31 0.77
At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi... 31 0.77
At1g31370.1 68414.m03839 expressed protein ; expression supporte... 29 1.8
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /... 29 3.1
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 28 4.1
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 28 5.4
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ... 28 5.4
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 28 5.4
At2g18730.1 68415.m02181 diacylglycerol kinase, putative contain... 27 9.5
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 27 9.5
>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
nap gene, Arabidopsis thaliana, gb:AJ222713
Length = 341
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 301 GASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEY 170
G +G ++V S+ H+ + W + D L T G++ SSRG Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 510 NPAKSCKARGSNLRVHF 560
N KSCKARGS+LRVHF
Sbjct: 10 NQTKSCKARGSDLRVHF 26
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 510 NPAKSCKARGSNLRVHF 560
N KSCKARG++LRVHF
Sbjct: 10 NITKSCKARGADLRVHF 26
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = -1
Query: 358 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRG 179
A R+G S S + G +L S A V +WV +D++ ++ SD G
Sbjct: 62 AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121
Query: 178 TEYSTTCRTARRAYSKARMACDTGG 104
RT+ A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145
>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 371
Score = 31.1 bits (67), Expect = 0.58
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Frame = -1
Query: 460 NTVRTASYNIKRPVADI-SQHPNHDSEQPP--ELLKTAVPRRGAKLNARSTSILVRGASL 290
+T+R S N V SQ PN D E LLK V AKL A +TSI+ A L
Sbjct: 242 STMRKVSSNNGVGVGTFKSQKPNFDDEDDDGDSLLKALV----AKLVASTTSIVAAYAEL 297
Query: 289 GNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDT 110
S A ++ + L +SNG S S+ RR+ + ++ +
Sbjct: 298 QRAHSDAIQAAETVVVDVKTLSELIRSSNGGGGGSGSGSGSSLENQPRRSKVRKQVWAEV 357
Query: 109 GGKAS 95
G +S
Sbjct: 358 LGISS 362
>At5g63540.1 68418.m07975 expressed protein ; expression supported
by MPSS
Length = 602
Score = 30.7 bits (66), Expect = 0.77
Identities = 30/96 (31%), Positives = 42/96 (43%)
Frame = -1
Query: 454 VRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDS 275
+ TAS + +R +DI + + + T GA ARS + V G SL +
Sbjct: 330 IDTASAHGERTFSDIHS-TSSNIHRAASTAGTGTSCSGACSGARSFANNVGGNSLDQTSN 388
Query: 274 VTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYS 167
VTS + I R+ D TT GSDS E+S
Sbjct: 389 VTSFVEEMHIDTGRVRD-TTTHIYGSDSGGVAAEFS 423
>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 899
Score = 30.7 bits (66), Expect = 0.77
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +1
Query: 250 ELDGRLKSRCLRSRATLL*RVWT*SAR*ASLRVVAPRSSRAL-EAVRC-RGSDVGKCRRL 423
EL G++ + +++ +T +W AR + ++ S AL + VR +GS+V K +
Sbjct: 764 ELLGKVIQQIVKTESTA--EIWGLYARWSRIKGDLTVCSEALLKQVRSYQGSEVWKDKER 821
Query: 424 AA*YCNSLFERCFSFSVLNITLIKKREPVTLRNHAKRVVQTSVFTFKNTYE 576
+ + E C + ++ ++ KRE T H K ++ + +F ++ E
Sbjct: 822 FKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQATVSFLDSEE 872
>At1g31370.1 68414.m03839 expressed protein ; expression supported
by MPSS
Length = 193
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 462 KTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCH 349
K+ FE+ I S P P++RTT+ NSL S CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163
>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Lycopersicon
esculentum] GI:4325090; contains PF00295: Glycosyl
hydrolases family 28
Length = 471
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 295 SLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARM 122
S G G + HR LI+ LTD + T NG+ +GT + R Y++ +
Sbjct: 125 SYGRGRELPGRRHRSLIYGQNLTDVVITGENGT-IDGQGTVWWDWFRNGELNYTRPHL 181
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 241 VWRLTDHLTTASNGSDSSSRGTEYSTT 161
+W + DH+T A GSDS S G+ + T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 35 SIPKFHSSLQDLKQPSLQEPRCLATRV 115
++ K SS +DL L+ PRCLA+ V
Sbjct: 21 NVSKGKSSSEDLTNVKLESPRCLASNV 47
>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
putative nearly identical to 67kD chloroplastic
RNA-binding protein, P67 [Arabidopsis thaliana]
GI:9755842
Length = 688
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +2
Query: 305 DEYGRRARVELRSASWHRGLQELWRL----FAVVVRMLGNVGDW 424
D YGR V++ + + R E WR+ F+ ++R+ G G++
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 282
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 320 RARVELRSASWHRGLQELWRLFAVVVRMLGNV 415
RAR+ L A G + +W A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776
>At2g18730.1 68415.m02181 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 488
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 294 DAPLTSMDVERALSFAPRRGTAVFKSSGGC---SLSWFGCWEMSATGRLIL 437
D+P++ D + A R TA K+ GC +L+W G ++ RL++
Sbjct: 2 DSPVSKTDASKEKFVASRPSTADSKTMRGCGLANLAWVGVDKVELRQRLMM 52
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 445 ASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILV 305
++Y+I+ I + Q LK PRRG KLNA++ I +
Sbjct: 330 STYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFM 376
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,709,904
Number of Sequences: 28952
Number of extensions: 236876
Number of successful extensions: 741
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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