Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0380
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    71   1e-13
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    34   0.018
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    29   0.39 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   1.6  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    27   2.1  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    27   2.1  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   2.1  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    27   2.1  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   3.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.8  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   4.8  

>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 28/50 (56%), Positives = 36/50 (72%)
 Frame = +1

Query: 256 CQFAHGVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
           CQFAHG +EL+   RHPKYK+E CR F   G+CPYG RC F+H+   A++
Sbjct: 347 CQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFLHDESNAQK 396



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEEAR 402
           YKTE C+ +   G C YG +C F H  +E +
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELK 357



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 197 YKTELCRPFEEAGVCKYG 250
           YKTE C+ ++ +G C+YG
Sbjct: 327 YKTEPCKNWQISGTCRYG 344



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 197 YKTELCRPFEEAGVCKYG 250
           YK+E CR F   G C YG
Sbjct: 365 YKSERCRSFMMYGYCPYG 382


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEE 396
           Y+ ++C+ +   G+C YG  C F+H  E+
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMRED 213



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
           Y+ ++C+ ++  G C YGD    L    +Y
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMREDY 214


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 398 QDAENHRRQEVHWASLSSGGSMASYMSDGSRSPR---SPHLH*TPHSSTCD 541
           ++ E+ R+ EV+ A L+ G   A +++ G++  +     HLH  PHS  CD
Sbjct: 58  EEDEDTRKLEVYVAKLT-GKEAALFVTSGTQGNQLCIRSHLHQPPHSIICD 107


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 268 HGVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEAR 402
           +GV  ++NLQ  P      C+ F + G C  G  C F H+ E  R
Sbjct: 34  NGVSTVKNLQHVP------CKFFRN-GTCTAGENCPFSHSLETER 71


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 430 SLGIALIGRIYGVVYERRVAIATL 501
           SLG+A+ G ++GVV  R   I T+
Sbjct: 403 SLGVAMEGNVFGVVCPRNTPIPTI 426


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 292 LQRHPKYKTELCRXFHSVGFCPYGPRCHFVH 384
           L   P  +  +C  ++++GFCP GP C   H
Sbjct: 100 LHLDPSKQVGVCA-WYNMGFCPLGPICRGKH 129



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 346 GFCPYGPRCHFVH 384
           GFCP GP C   H
Sbjct: 142 GFCPLGPNCPDAH 154


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 325 CRXFHSVGFCPYGPRCHFVH 384
           CR +++ G C  G  C FVH
Sbjct: 209 CRYYNANGICGKGAACRFVH 228


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 370 CHFVHNAEEARRREPSSPGGSLGIALIGRIYGVVYER--RVAIATLAASP-LNASLFH 534
           CHF  N E A      SP  +   A + + YG  YER     + +LAAS  LN S  H
Sbjct: 269 CHFWSNFEIANLNFFRSPAYTDYFAHLDKNYGFFYERWGDAPVHSLAASLFLNKSQIH 326


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 301 HPKYKTELCRXFHSVGFCPYGPRCHFVHNAE 393
           H K    LC        CPY   C F H+ E
Sbjct: 40  HVKENNALCPAISIGNECPYKENCKFPHDVE 70


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 8    GAIGPIGANSVSSGLSWEQHPVLSRASSVPAHRAL 112
            G I  +  +  +S L WE+HP+  R S++  H  +
Sbjct: 1329 GCIAMVFTDIKNSTLLWERHPIAMR-SAIKTHNTI 1362


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 233 PLLQTVGRARSCSDLWLVAEEPVH 162
           PL +T+G A S + +WL+ EE ++
Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,298
Number of Sequences: 5004
Number of extensions: 46120
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)