Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0380
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 105 3e-23
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) 41 9e-04
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 34 0.10
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 29 2.9
SB_38091| Best HMM Match : Viral_Rep (HMM E-Value=5.1) 29 3.8
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05) 28 5.0
SB_39626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_30232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 28 6.6
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22) 28 6.6
SB_31538| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039) 27 8.7
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 105 bits (252), Expect = 3e-23
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSS 420
CQFAHG ELR L RHPKYKTELCR FH++GFCPYGPRCHF+HNA+E R P+S
Sbjct: 175 CQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCHFIHNADEKRAPPPNS 229
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +1
Query: 286 RNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
R Q +YKTELCR F G C YG +C F H E R+
Sbjct: 147 RGSQNSSRYKTELCRPFEESGTCKYGDKCQFAHGYHELRQ 186
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGD 253
YKTELCRPFEE+G CKYGD
Sbjct: 155 YKTELCRPFEESGTCKYGD 173
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLL 268
YKTELCR F G C YG + +
Sbjct: 193 YKTELCRTFHTIGFCPYGPRCHFI 216
>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
Length = 505
Score = 40.7 bits (91), Expect = 9e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 313 KTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSSPGG 429
K LCR F + G+C YG +C FVH + + + +PGG
Sbjct: 14 KPTLCRYFSANGYCFYGDQCQFVHAKQTSNDQARPAPGG 52
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 33.9 bits (74), Expect = 0.10
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEE 396
Y+ ++C+ + GFC +G C F+H+ +
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLHDRSD 207
Score = 30.7 bits (66), Expect = 0.93
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C +GD+ L ++Y
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLHDRSDY 208
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 313 KTELCRXFHSVGFCPYGPRCHFVH 384
+ ++CR + G C +G +C FVH
Sbjct: 39 RQKVCRFYAKKGNCRFGEKCRFVH 62
>SB_38091| Best HMM Match : Viral_Rep (HMM E-Value=5.1)
Length = 156
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 326 VAXSIRLASVLMDRVAISCITQRKQDAENHRRQEVHWASL 445
+A S R+ +++++ +AI C ++ +D Q++H ASL
Sbjct: 107 LASSKRVKALILEEIAIDCHNRKLEDDILREAQQLHLASL 146
>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
Length = 720
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 268 HGVRELRNLQRH--PKYKTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSS 420
+G+ +R LQ++ PKY +LCR +V F P R ++ R R S+
Sbjct: 56 NGIIRVRVLQQNEQPKYGVDLCRKSSAVHFAPTAYRGLMEKMKQKQRERSRSN 108
>SB_39626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 557 LCWWRHRRWKSEAFNGDAASVAIATRRSYTTP*IRPMRAMP 435
+C +RHR K++AF D V ++ + T P RP++ P
Sbjct: 206 VCLYRHRLNKTDAFIADKLKVDVSQVAAVTCP--RPIKTHP 244
>SB_30232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 396 SKTQRTIVARRFIGHRSHRADLWRRI*ATGRDRHARRISIERLTLPPAMSPPAQG 560
+K+ ++ + +G D+ + + ATG + I+R +LPP P +G
Sbjct: 72 AKSNKSEPEKASLGSDDFLDDILKEVEATGSQPRSSPFGIQRASLPPVKCKPKEG 126
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 156 PPVNRLLRHQPQVATRP--SSADRLKKRGFVN 245
PP RLL H P+++ RP S+ L+K G +N
Sbjct: 454 PPFERLLEHLPRLSPRPYSISSSPLEKPGQLN 485
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 307 KYKTELCRXFHSVGFCPYGPRCHFVHN 387
K K +C F G C +G +C FVHN
Sbjct: 105 KGKKRVCWKFQK-GKCRFGEKCKFVHN 130
>SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22)
Length = 1046
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 404 AENHRRQEVHWASLSSGGSMASYMSDGSRSPRSPHLH*TPHSSTCDV----ATSTGPQAX 571
A+ HRR H + +SG + A + R+ R P+ P+S + TGP A
Sbjct: 448 AQPHRRVPFHISQAASGTATAGRRAWRDRTRRRPYTLGVPYSGCAETKVPRQAPTGPNAL 507
Query: 572 RFFAARN 592
+ RN
Sbjct: 508 QTSQLRN 514
>SB_31538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.9 bits (59), Expect = 6.6
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 3/137 (2%)
Frame = +3
Query: 150 NAPPVNRLLRHQPQVATRPSSADRLKKRGFVNMGIMPICSRRPRTTQSSASS*IQ---DG 320
N P + +R P PS A R +K+G +P+ +R + + ++ D
Sbjct: 446 NYPRLPATIRFDPD----PSVAHRYRKQGRP----VPVPGKRGEKVDAYKGTVVEVPLDA 497
Query: 321 AVSXFPFGWLLSLWTALPFRA*RRGSKTQRTIVARRFIGHRSHRADLWRRI*ATGRDRHA 500
++ P W S W + R KT +T R FI S + + TG R
Sbjct: 498 VLNGLPLEWKYSGWGTVQ----RVQGKTIQT-PRRLFIIDHSLEGWITNAV-YTGISRVR 551
Query: 501 RRISIERLTLPPAMSPP 551
R I R+T PP+ +PP
Sbjct: 552 RADQIVRVTPPPSDNPP 568
>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 505 RRAWRSRPVAHIRRHRSAR*----ERCPMNLLATMVLCVLLP 392
RRA RSR +RR + R RCP LLA+ C+ LP
Sbjct: 642 RRARRSRKKRIVRRDKLPRATIFHRRCPKLLLASGACCMSLP 683
>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
Length = 485
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 343 VGFCPYGPRCHFVHNAEEARRR 408
+G C +GPRC F H + +R
Sbjct: 198 LGRCTFGPRCRFYHPDRDPTKR 219
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,734,745
Number of Sequences: 59808
Number of extensions: 408619
Number of successful extensions: 1173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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