Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0380
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 71 4e-13
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 71 4e-13
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 44 3e-05
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 44 8e-05
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 42 3e-04
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 40 0.001
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 39 0.002
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 37 0.012
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 35 0.036
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 35 0.036
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 34 0.083
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.083
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.083
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 34 0.083
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.083
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 32 0.25
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 32 0.25
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 32 0.33
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 31 0.58
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 31 0.58
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 31 0.58
At5g57790.1 68418.m08529 expressed protein 31 0.77
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 30 1.3
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 29 1.8
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 29 1.8
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 29 1.8
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 29 1.8
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 29 1.8
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 29 1.8
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 3.1
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 3.1
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai... 29 3.1
At5g60280.1 68418.m07555 lectin protein kinase family protein co... 28 4.1
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 28 4.1
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ... 28 4.1
At3g18295.1 68416.m02327 expressed protein 28 4.1
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 28 4.1
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 28 5.4
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 28 5.4
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 27 7.2
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 27 9.5
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 27 9.5
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 27 9.5
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 9.5
>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 308
Score = 71.3 bits (167), Expect = 4e-13
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
CQFAHG++ELR + RHP+YKTE+CR + CPYG RCHF H+ E +
Sbjct: 243 CQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEK 292
Score = 41.1 bits (92), Expect = 5e-04
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 313 KTELCRXFHSVGFCPYGPRCHFVHNAEEAR 402
KTELC + G CPYG C F H +E R
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253
Score = 31.9 bits (69), Expect = 0.33
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 200 KTELCRPFEEAGVCKYGDN 256
KTELC ++E G C YGD+
Sbjct: 224 KTELCNKWQETGTCPYGDH 242
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 71.3 bits (167), Expect = 4e-13
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
CQFAHG+ ELR + RHP+YKTE+CR + CPYG RCHF H+ + R
Sbjct: 253 CQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQER 302
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 271 GVRELRNLQ--RHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEAR 402
G RE L+ R KTELC + G C YG C F H +E R
Sbjct: 218 GEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELR 263
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 200 KTELCRPFEEAGVCKYGDN 256
KTELC ++E G C YGDN
Sbjct: 234 KTELCNKWQETGACCYGDN 252
>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 252
Score = 44.4 bits (100), Expect(2) = 3e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 298 RHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEE 396
+ P +KT +C + + G+CP+G CHF H E
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 172
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPR-CHFVHNAEEARRREPSSP 423
+KT+LC F + G CPY CHF H+AEE R P P
Sbjct: 72 FKTKLCFKFRA-GTCPYSASSCHFAHSAEELRLPPPPPP 109
Score = 20.6 bits (41), Expect(2) = 3e-05
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 256 CQFAHGVRELR 288
C FAH ELR
Sbjct: 92 CHFAHSAEELR 102
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 44.0 bits (99), Expect = 8e-05
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
+KT +C + G+CP+G +CHF H A E R
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPS 417
+KT+LC F + G CPY C+F H EE RR P+
Sbjct: 92 FKTKLCCKFRA-GTCPYITNCNFAHTVEELRRPPPN 126
Score = 33.9 bits (74), Expect = 0.083
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEEARRRE 411
+K C+ F++ CPYG C F+H+ E +R RE
Sbjct: 173 FKGRHCKKFYTEEGCPYGESCTFLHD-EASRNRE 205
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 301 HP--KYKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
HP YKT++C + S G C YG RCHF H E RR
Sbjct: 201 HPGSNYKTKICDRY-SKGNCTYGDRCHFAHGESELRR 236
Score = 35.1 bits (77), Expect = 0.036
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 262 FAHGVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVH 384
F +E+ ++ K++ C F S CP+G CHF+H
Sbjct: 21 FKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEE 396
+KT LC F G CP+G +CHF H E
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAE 298
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 313 KTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPS 417
+ +LCR F CPYG RC+F+H + ++ RE S
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIHE-DLSKFREDS 218
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
YKT +C F + G C G C+F H E+ R+
Sbjct: 105 YKTRMCAKFRA-GTCRNGELCNFAHGIEDLRQ 135
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASA 280
+KT LC F+ G C +GD + A
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQA 297
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 301 HP--KYKTELCRXFHSVGFCPYGPRCHFVHNAEEARR 405
HP +KT++C F S G C +G RCHF H E R+
Sbjct: 209 HPGSNFKTKICERF-SKGNCTFGDRCHFAHGEAELRK 244
Score = 33.5 bits (73), Expect = 0.11
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 313 KTELCRXFHSVGFCPYGPRCHFVH 384
K++ C F S CP+G CHF+H
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEE 396
W C FAH G + R R +Y E+C F G C G C F H E
Sbjct: 101 WTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFE 151
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +1
Query: 319 ELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSSPGGSLGIALIGR 456
+LC F G CP G CHF HNAE RE G L + + G+
Sbjct: 304 KLCFKFVCSGSCPRGEDCHFQHNAE---AREQCRRGVCLDLIIKGK 346
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +1
Query: 319 ELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSSPGGSLGIALIGR 456
+LC F G CP G CHF HNAE RE G L + + G+
Sbjct: 115 KLCFKFVCSGSCPRGEDCHFQHNAE---AREQCRRGVCLDLIIKGK 157
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 33.9 bits (74), Expect = 0.083
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEE 396
W C F+H G + R R Y E+C F G C G C F H E
Sbjct: 79 WTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFE 129
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 33.9 bits (74), Expect = 0.083
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHN 387
Y+ ++C+ + G+C YG C F+H+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261
Score = 31.9 bits (69), Expect = 0.33
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C YGD+ L +Y
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 265
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 33.9 bits (74), Expect = 0.083
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHN 387
Y+ ++C+ + G+C YG C F+H+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261
Score = 31.9 bits (69), Expect = 0.33
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C YGD+ L +Y
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 265
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSS 420
YKT+LC F+ G C P C F H E RR SS
Sbjct: 7 YKTKLCILFNKTGDCS-RPNCTFAHGNAELRRPGESS 42
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 33.9 bits (74), Expect = 0.083
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 YKTELCRXFHSVGFCPYGPRCHFVHN 387
Y+ ++C+ + G+C YG C F+H+
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHD 226
Score = 31.9 bits (69), Expect = 0.33
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286
Y+ ++C+ ++E G C YGD+ L +Y
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 230
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 32.3 bits (70), Expect = 0.25
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVH 384
C F S GFC +GP C F H
Sbjct: 313 CGNFRSYGFCKFGPNCKFDH 332
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVHNAEEARRREPS 417
CR F + G C YG C + H + PS
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPS 297
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVH 384
C F G C YGP C + H
Sbjct: 96 CEYFLKTGACKYGPTCKYHH 115
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 32.3 bits (70), Expect = 0.25
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVH 384
C F S GFC +GP C F H
Sbjct: 313 CGNFRSYGFCKFGPNCKFDH 332
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVHNAEEARRREPS 417
CR F + G C YG C + H + PS
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPS 297
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVH 384
C F G C YGP C + H
Sbjct: 96 CEYFLKTGACKYGPTCKYHH 115
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 304 PKYKTELCRXFHSVGFCPYGPRCHFVHNAEEARRR 408
P +KT LC F C +G C + H E R +
Sbjct: 78 PWWKTSLCSYFRREASCSHGNECKYAHGEAELRMK 112
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHP-KYKTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSSPGG 429
C++AHG+ E HP +Y+T LC+ + C C F H EE R PS+ G
Sbjct: 269 CEYAHGIFEC---WLHPAQYRTRLCKDETN---CSRRV-CFFAHKPEELRPLYPSTGSG 320
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHP-KYKTELCRXFHSVGFCPYGPRCHFVHNAEEARRREPSSPGG 429
C++AHGV E HP +Y+T LC+ G C F H EE R PS+ G
Sbjct: 317 CEYAHGVFEC---WLHPAQYRTRLCKD----GMGCNRRVCFFAHANEELRPLYPSTGSG 368
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 313 KTELCRXFHSVGFCPYGPRCHFVHNAEEARRREP 414
+ ELCR F G C YG C F+H ++A+ P
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFLH-PQQAKPNNP 33
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 200 KTELCRPFEEAGVCKYGDNANLL 268
+ ELCR F+ G C+YG+N L
Sbjct: 2 RKELCRNFQR-GSCRYGENCRFL 23
>At5g57790.1 68418.m08529 expressed protein
Length = 205
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 147 SNAPPVNRLLRHQPQVATRPSSADRLKKRGFVNMGIMPICSRR 275
SN PP+ + P ++PS+ D + GF ++GI + +R
Sbjct: 43 SNFPPLTTEIDTPPPSNSKPSTVDDISMEGFESLGIEKLIKKR 85
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVHNAEEARRREPSS 420
C F G C +GP C F H+ + PS+
Sbjct: 334 CTHFAQHGICKFGPACKFDHSMSSSLSYSPSA 365
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 226 RSGGL*IWG*CQFAHGVRELRNLQRHP-KYKTELCRXFHSVGFCPYGPRCHFVHNAEEAR 402
R GG C+FAHGV E HP +Y+T+ C+ G C C F H+ ++ R
Sbjct: 129 RKGGCKKGDSCEFAHGVFE---CWLHPARYRTQPCK---DGGNC-LRKICFFAHSPDQLR 181
Query: 403 RREPSSP 423
SP
Sbjct: 182 FLHTRSP 188
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEA 399
W C F H G R R Y C F G CP G C + H E+
Sbjct: 230 WTECAFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 280
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 322 LCRXFHSVGFCPYGPRCHFVHNAEEARRREPS 417
+C + G C +GP C F H+ + E S
Sbjct: 397 ICTYYSRYGICKFGPACRFDHSVQPPYSTESS 428
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAEEA 399
W C F H G R R Y C F G CP G C + H E+
Sbjct: 233 WTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 283
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVHNAEEARRREPS 417
CR F + G C YG C + H E + P+
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKERLLQSPPT 297
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVHN 387
C F + GFC +G C F H+
Sbjct: 313 CGNFKAYGFCKFGANCKFDHS 333
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 274 VRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVH 384
+R R P++ ++C F+ GFC +G C + H
Sbjct: 145 LRTSRRSPSLPEFPVKICHYFNK-GFCKHGNNCRYFH 180
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 313 KTELCRXFHSVGFCPYGPRCHFVH 384
KTE F G CPYG +C ++H
Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLH 126
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 277 RELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVH 384
RE + +H + C + +GFCP GP C + H
Sbjct: 104 REQDCVYKHTNEDIKECNMY-KLGFCPNGPDCRYRH 138
>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
domain-containing protein contains Pfam profile PF01556:
DnaJ C terminal region
Length = 438
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 530 KSEAFNGDAASVAIATRRSYTTP*IRPMRAMPNEPPGDDGSLRLASSALC 381
KS++ A S+A + R TTP + P +PP + L LC
Sbjct: 222 KSKSTRDTAGSIAKSISRRSTTPIVFSQSTPPKKPPAVEKKLECTLEELC 271
>At5g60280.1 68418.m07555 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain, and
PF00069: Protein kinase domain
Length = 657
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 317 RSCVAXSIRLASVLMDRVAISCITQRKQDAENHRRQEVHWASLSSGGSMASYMSDGSRSP 496
+S ++ S+ L+ V+ DR+ + Q A NH + W+ S S+ S D S+ P
Sbjct: 217 QSLISRSMNLSEVIQDRMFVGFSAATGQLANNH--YILGWSFSRSKASLQSL--DISKLP 272
Query: 497 RSPH 508
+ PH
Sbjct: 273 QVPH 276
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 CQFAHGVRELRNLQRHP-KYKTELCRXFHSVGFCPYGPRCHFVHNAEEARRRE 411
C+FAHGV E HP +Y+T C + G C F H E+ R+ E
Sbjct: 112 CEFAHGVFE---YWLHPARYRTRAC----NAGNLCQRKVCFFAHAPEQLRQSE 157
>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 633
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 265 AHGVRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFV-HNAEEARRREPSSP 423
+H LR +R P+Y+ ++C H + PY C N + + R+P P
Sbjct: 67 SHPEHPLRLTERPPRYECDIC-GIHHLADVPYFYHCSICDFNVDTSCARKPPPP 119
>At3g18295.1 68416.m02327 expressed protein
Length = 216
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 458 IRPMRAMPNEPPGDDGSLRLASSALCTKWQRG 363
+R RA NEPPGDD + + SS+ + + G
Sbjct: 101 LRTRRAACNEPPGDDSTRIIESSSSLRRHEIG 132
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVHNAEE---ARRREPSSPGGSLGIA 444
C + G C +G RC F H A+ ++ P P L +A
Sbjct: 426 CDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLA 468
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 322 LCRXFHSVGFCPYGPRCHFVHN 387
+C + G C +GP C F H+
Sbjct: 385 MCTHYSRYGICKFGPACRFDHS 406
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 274 VRELRNLQRHPKYKTELCRXFHSVGFCPYGPRCHFVHNAE 393
VRE +PK C+ + G C YG C F H E
Sbjct: 139 VRERDEDVENPKLME--CKYYFRTGGCKYGESCRFSHMKE 176
>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
protein predicted proteins, Arabidopsis thaliana
Length = 381
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 304 PKYKTELCRXFHSVGFCPYGPRCH 375
P++ ++C F+ GFC +G CH
Sbjct: 163 PEFPLKICHYFNK-GFCKHGNNCH 185
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 325 CRXFHSVGFCPYGPRCHFVHNAEEARRREPSSP 423
C F G C +GP C F H+ + SP
Sbjct: 342 CTHFAQHGICKFGPACKFDHSLGSSSLSYSPSP 374
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 322 LCRXFHSVGFCPYGPRCHFVH 384
LC + G C +GP C F H
Sbjct: 273 LCVFYSRYGICKFGPSCKFDH 293
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 322 LCRXFHSVGFCPYGPRCHFVH 384
LC + G C +GP C F H
Sbjct: 287 LCVFYSRYGICKFGPSCKFDH 307
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 322 LCRXFHSVGFCPYGPRCHFVH 384
LC + G C +GP C F H
Sbjct: 294 LCVFYSRYGICKFGPSCKFDH 314
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 350 SVLMDRVA-ISCITQRKQDAENHRRQ 424
SVLMD V + C+T + D E HR +
Sbjct: 418 SVLMDHVGPVKCLTAVEDDGEGHREK 443
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,699
Number of Sequences: 28952
Number of extensions: 272178
Number of successful extensions: 957
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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