Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0379
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    27   1.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   9.0  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   9.0  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    25   9.0  

>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = -3

Query: 291 SVRYPRDDLVVAGSQASLTDAWNC*YDDPDITSFGMTLW*GLPGTAR*GVLQNVSDNKPL 112
           S +YP   L+  G Q S TD+W+  ++     + G  ++  L  T   G  Q  +D+  L
Sbjct: 442 SKKYPVAVLIHGGPQGSWTDSWSTRWNPAVFANAGFIVF-ALDPTGSTGYGQRFTDSIAL 500

Query: 111 SCSGS*FSIITYNLKH 64
              G  +  I   +++
Sbjct: 501 DWGGKPYKDIELGVEY 516


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +2

Query: 101 PEHDKGLLSDTFWRTPQRAVPGRPYQRVIPNEVMSGSSYQQFQASVNDAWD 253
           P+H   + S        ++ P R   R +PNE  + ++Y  + +  N  +D
Sbjct: 76  PQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTTYSSFPNALFD 126


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 185 IPNEVMSGSSYQQFQASVNDAWDPATTRSSRG 280
           +P  + +G   +QF   +N  WD  T +   G
Sbjct: 148 MPRLMKTGDKEEQFALLLNKIWDEQTNKHKNG 179


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 83  IMENHEPEHDKGLLSDTFWRTPQRAVPGRPYQRVI 187
           ++EN      KG+L D    TP+   P  P  R+I
Sbjct: 37  MVENVSSTPKKGVLEDPSTLTPEVVTPRTPGHRII 71


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 174 TKGSSQTRLCPGRRISNSRRQSTTPGIRRRR 266
           T  SSQ R  PG    ++   + TP ++RRR
Sbjct: 242 TVASSQRRGTPGSNNVHTASNNETPDMKRRR 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,097
Number of Sequences: 5004
Number of extensions: 31527
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)