Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0379
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0240 + 13397512-13397856                                         29   2.2  
03_06_0100 - 31647506-31647664,31647752-31647835,31647933-316480...    29   2.2  
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     28   5.2  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    27   6.8  
06_02_0219 + 13188304-13188620,13189404-13189645,13190334-131904...    27   6.8  
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646     27   6.8  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     27   9.0  

>06_02_0240 + 13397512-13397856
          Length = 114

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 200 MSGSSYQQFQASVNDAWDPATTRSSRG*RTL 292
           MSGS+++ F++ V  AW P   R   G R L
Sbjct: 1   MSGSAFKAFKSRVEVAWSPKLVRGLPGTRRL 31


>03_06_0100 -
           31647506-31647664,31647752-31647835,31647933-31648089,
           31648181-31648446,31648524-31648796,31648874-31648985,
           31649112-31649331,31649476-31649899
          Length = 564

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 166 EALPKGHPKRGYVRVVVSAIPGVSQRRLGSGDDEIISGIADTKISKSXXETAALNVI 336
           EA+P G  K     V   A P VSQR  G G +    G  + K+++   E AAL ++
Sbjct: 56  EAIPAGTGKAKKQVVFFDAAPPVSQRGGGGGGEGEGEGEGEGKVAR-RKENAALGLV 111


>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 151 ARCTGEALPKGHPKRGYVRVVVSAIPGVSQRRLGSGDDEI 270
           AR + EA P   P+R   R  V   PG    R G G++++
Sbjct: 21  ARKSKEAAPPREPRRARSRSHVPPPPGAGDGRGGDGEEDV 60


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 62  ECFKLYVIMENHEPEHDKGLLSDTF-WRTPQRAVPGRPYQRVIPNEVMSGSSYQQFQASV 238
           E ++ +    +H    D  +L  ++  + P   VP  P++ + P+  M    YQ      
Sbjct: 324 EYYESFSTYNHHNSNDDSDMLGHSYDIQLPDEHVPDEPFEPIKPSWAMHSGYYQSCTDGA 383

Query: 239 NDAWDPATTRSS 274
           +  ++  T  SS
Sbjct: 384 SAEFENHTLSSS 395


>06_02_0219 +
           13188304-13188620,13189404-13189645,13190334-13190475,
           13191084-13191145,13191503-13191540
          Length = 266

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 148 SARCTGEALPKGHPKRGYVRVVVSAIPGVSQRRLGSG 258
           +A  T E LPKG  KRG+   +V    G  QRR  +G
Sbjct: 47  AAPLTLELLPKGGAKRGFADAIVGGPAG--QRREAAG 81


>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
          Length = 378

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +3

Query: 81  LLWKITNPNMTRVCCLTRSGGHLSALYRGGLTKGSSQTRLCPGRRISNSRRQSTTPGIRR 260
           L+ K     + R+  L R      A  R    K   Q R+     +  +R ++TTPG RR
Sbjct: 126 LVRKQAATTLHRLQALMRQQASSRAATRASYRKSMEQERIS----VEETRLKTTTPGHRR 181

Query: 261 RRDHLGDSGH 290
           R     DS +
Sbjct: 182 RLSDSADSNY 191


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 95  HEPEHDKGLLSDTFWRTPQRAVPGRPYQRVIPNEVMSGSS 214
           H+       L   +W  P  AVP  P Q+  P E  +G +
Sbjct: 530 HDQPQQPEPLGPAYWLAPVHAVPPPPQQQQQPEEGQAGGA 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,076
Number of Sequences: 37544
Number of extensions: 235617
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)