Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0379
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22356| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_28319| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)                 28   4.0  
SB_56447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_29603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   5.3  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        27   7.0  
SB_13926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                27   9.3  

>SB_22356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 223 IPGVSQRRLGSGDDEIISGIADTK 294
           + G+ +R L  GD E+I+GIA+ K
Sbjct: 59  LEGIQRRLLNDGDTELINGIAEVK 82


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 174 TKGSSQTRLCPGRRISNSRRQSTTPGIRRRRDHLGDSG 287
           TKGSS    CPG R+ +S+  +  P I  +  ++   G
Sbjct: 238 TKGSSDNSTCPG-RVKSSKHLNKPPSIDTKHSNIETDG 274


>SB_28319| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
          Length = 179

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 320 AVSXXLFDILVSAIPEMISSSPDP 249
           ++S  LF+I ++ IPE+ SSS DP
Sbjct: 30  SLSPTLFNIFINDIPEIFSSSCDP 53


>SB_56447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 317 VSXXLFDILVSAIPEMISSSPDP 249
           +S  LF+I ++ IPE+ SSS DP
Sbjct: 7   LSPTLFNIFINDIPEIFSSSCDP 29


>SB_29603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 317 VSXXLFDILVSAIPEMISSSPDP 249
           +S  LF+I ++ IPE+ SSS DP
Sbjct: 31  LSPTLFNIFINDIPEIFSSSCDP 53


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +3

Query: 114  RVCCLTRSGGHLSALYRGGLTKGSSQTRLCP-----GRRISNSRRQSTTPGIRRR 263
            R+C + R G   + LYR  L K + + R C      GR    SRR  T P  RRR
Sbjct: 1273 RICGVRRKGRKFAFLYRRKLLKVTIERRTCRVRIRLGRAKYASRRMRTLP--RRR 1325


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 141 GHLSALYRGGLTKGSSQTRLCPGRRISNSRRQSTTPG 251
           G LS ++ GG+ +  +Q R    R +  S +   TPG
Sbjct: 625 GGLSVVFAGGVQRSKTQFRAVVRREVFASSKPGATPG 661


>SB_13926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 518 REATLIAALGEAEPGY 471
           REATLIA  G  EPGY
Sbjct: 289 REATLIARAGTLEPGY 304


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 50   KHS*ECFKLYVIMENHEPEHDKGLLSDT---FWRTPQRAVPGRPYQRVIPNEVMSGSSYQ 220
            K++  CF  Y    ++E E +     +T    +++P  + PG PY    P+    G++Y 
Sbjct: 967  KYNGLCFNCYHRGLDNEAEWNAIRQKNTQLPHYQSPPFSQPGAPYNTTKPSYTQPGTTYN 1026

Query: 221  QFQASVNDAWDPATTR 268
                S      P  T+
Sbjct: 1027 TTSTSYTQPGAPCQTK 1042


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,095
Number of Sequences: 59808
Number of extensions: 258104
Number of successful extensions: 737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)