Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0379
         (518 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590103-12|CAI12136.1|  190|Homo sapiens heparan sulfate proteo...    31   3.2  
BC008623-1|AAH08623.1|  147|Homo sapiens ROBO3 protein protein.        29   9.8  
AK024697-1|BAB14966.1|  309|Homo sapiens protein ( Homo sapiens ...    29   9.8  

>AL590103-12|CAI12136.1|  190|Homo sapiens heparan sulfate
           proteoglycan 2 protein.
          Length = 190

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 196 GYVRVVVSAIPGVSQRRLGSGDDEIISGIADTKISKSXXETAAL 327
           G V   V++  G   RRLG+G+  ++SGIA +++  S    +A+
Sbjct: 138 GSVASYVTSPQGFQFRRLGTGEPILVSGIASSRLVGSPFSVSAI 181


>BC008623-1|AAH08623.1|  147|Homo sapiens ROBO3 protein protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 174 TKGSSQTRLC--PGRRISNSRRQSTTPGIRRRRD 269
           ++GSS +R    PGR  S SR QS  PG +RR +
Sbjct: 112 SRGSSSSRGSRGPGRSRSQSRSQSQRPGQKRREE 145


>AK024697-1|BAB14966.1|  309|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21044 fis, clone CAE11659. ).
          Length = 309

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 174 TKGSSQTRLC--PGRRISNSRRQSTTPGIRRRRD 269
           ++GSS +R    PGR  S SR QS  PG +RR +
Sbjct: 274 SRGSSSSRGSRGPGRSRSQSRSQSQRPGQKRREE 307


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,205,596
Number of Sequences: 237096
Number of extensions: 1294266
Number of successful extensions: 2922
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2922
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)