Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0379
(518 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061479-1|AAL29027.1| 546|Drosophila melanogaster LD44506p pro... 32 0.54
AE014297-2927|AAF55847.2| 546|Drosophila melanogaster CG5745-PA... 32 0.54
M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein. 30 2.2
M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein ( D.me... 30 2.2
AY118927-1|AAM50787.1| 374|Drosophila melanogaster LD23870p pro... 29 2.9
AJ459409-1|CAD30680.1| 374|Drosophila melanogaster RNA-binding ... 29 2.9
AE014297-964|AAF54396.2| 374|Drosophila melanogaster CG16788-PA... 29 2.9
AE014298-3196|AAF50942.1| 530|Drosophila melanogaster CG17599-P... 29 5.0
AY061403-1|AAL28951.1| 1486|Drosophila melanogaster LD33266p pro... 28 8.7
AE014296-3600|AAF51764.1| 1486|Drosophila melanogaster CG7158-PA... 28 8.7
>AY061479-1|AAL29027.1| 546|Drosophila melanogaster LD44506p
protein.
Length = 546
Score = 31.9 bits (69), Expect = 0.54
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Frame = +2
Query: 116 GLLSDTFWRTPQRAVPGRPY-QRVIPNEVMSG--------------SSYQQFQASVNDAW 250
G S TFW+ R VPGRP +R + G S++ ++Q SV+DAW
Sbjct: 46 GANSSTFWKNSGRRVPGRPSPKRELEKAAAVGVAVGRGAAPGSGMVSTFTEYQKSVSDAW 105
Query: 251 D 253
D
Sbjct: 106 D 106
>AE014297-2927|AAF55847.2| 546|Drosophila melanogaster CG5745-PA
protein.
Length = 546
Score = 31.9 bits (69), Expect = 0.54
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Frame = +2
Query: 116 GLLSDTFWRTPQRAVPGRPY-QRVIPNEVMSG--------------SSYQQFQASVNDAW 250
G S TFW+ R VPGRP +R + G S++ ++Q SV+DAW
Sbjct: 46 GANSSTFWKNSGRRVPGRPSPKRELEKAAAVGVAVGRGAAPGSGMVSTFTEYQKSVSDAW 105
Query: 251 D 253
D
Sbjct: 106 D 106
>M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.
Length = 2483
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 148 SARCTGEALPKGHPKRGYVRVVVSAIPGVSQRRLGSGDDEIISGIADTKISKSXXETA 321
+A T E P +RG V V + +PG G GD ++ S + IS+ E+A
Sbjct: 1480 AAPSTKECCPGNQRRRGGVVVGGTTVPGTGGVTGGGGDPQLSSSHSFANISRQTSESA 1537
>M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein (
D.melanogaster pecanexgene, exons 1 (partial) and 2. ).
Length = 1938
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 148 SARCTGEALPKGHPKRGYVRVVVSAIPGVSQRRLGSGDDEIISGIADTKISKSXXETA 321
+A T E P +RG V V + +PG G GD ++ S + IS+ E+A
Sbjct: 935 AAPSTKECCPGNQRRRGGVVVGGTTVPGTGGVTGGGGDPQLSSSHSFANISRQTSESA 992
>AY118927-1|AAM50787.1| 374|Drosophila melanogaster LD23870p
protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 162 RGGLTKGSSQTRLCPGRRISNSRRQSTTPGIRRRRDHLGDS 284
RGG G R P R + RR+S +P RRRR + DS
Sbjct: 332 RGGGGGGGGGRRQSPMRNRRSPRRRSRSPIRRRRRSNSSDS 372
>AJ459409-1|CAD30680.1| 374|Drosophila melanogaster RNA-binding
protein S1 protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 162 RGGLTKGSSQTRLCPGRRISNSRRQSTTPGIRRRRDHLGDS 284
RGG G R P R + RR+S +P RRRR + DS
Sbjct: 332 RGGGGGGGGGRRQSPMRNRRSPRRRSRSPIRRRRRSNSSDS 372
>AE014297-964|AAF54396.2| 374|Drosophila melanogaster CG16788-PA
protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 162 RGGLTKGSSQTRLCPGRRISNSRRQSTTPGIRRRRDHLGDS 284
RGG G R P R + RR+S +P RRRR + DS
Sbjct: 332 RGGGGGGGGGRRQSPMRNRRSPRRRSRSPIRRRRRSNSSDS 372
>AE014298-3196|AAF50942.1| 530|Drosophila melanogaster CG17599-PA
protein.
Length = 530
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 214 VSAIPGVSQRRLGSGDDEI-ISGIADTKISKSXXE 315
+S I G+S LG+GDD+ ++ I D ISK E
Sbjct: 477 ISGISGMSNIALGAGDDDFDLNSIDDISISKLTGE 511
>AY061403-1|AAL28951.1| 1486|Drosophila melanogaster LD33266p protein.
Length = 1486
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 204 PGRRISNSRRQSTTPGIRRRRDHLGDSGH*NIEKXXGNSSL 326
P RRI + ++ PG +R D L GH N + NSSL
Sbjct: 1106 PPRRIQSQEALNSKPGGLQRADSLISMGH-NTSRDLDNSSL 1145
>AE014296-3600|AAF51764.1| 1486|Drosophila melanogaster CG7158-PA
protein.
Length = 1486
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 204 PGRRISNSRRQSTTPGIRRRRDHLGDSGH*NIEKXXGNSSL 326
P RRI + ++ PG +R D L GH N + NSSL
Sbjct: 1106 PPRRIQSQEALNSKPGGLQRADSLISMGH-NTSRDLDNSSL 1145
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,058,735
Number of Sequences: 53049
Number of extensions: 380159
Number of successful extensions: 1114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -