Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0379
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016441-8|AAB65913.2|  212|Caenorhabditis elegans Hypothetical ...    28   4.6  

>AF016441-8|AAB65913.2|  212|Caenorhabditis elegans Hypothetical
           protein M03F8.6 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 226 ELLIRRPGHNLVWDDPLVRPPRYSALRCPPERVRQQTLVMFGFV-IFHNNVQFETFLT 56
           +L+I R  H++ W+D  +   +YSA    P+R RQ+  +    + I  + V FE   T
Sbjct: 22  DLIIERRPHHVDWEDLFMEYNKYSA----PDRSRQEVNLTLEIIDISFHRVLFELVQT 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,068,715
Number of Sequences: 27780
Number of extensions: 187705
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)