Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0379
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61690.1 68416.m06913 expressed protein                             31   0.61 
At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein si...    28   3.3  
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic...    27   5.7  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    27   5.7  
At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xy...    27   7.6  
At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein si...    27   7.6  
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy...    27   7.6  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   7.6  

>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 176 QRVIPNEVMSGSSYQQFQASVNDAWDPATTRSSRG*RTLKYRKV 307
           +R + +  +SG+S  + + S   +WD +TTR S+  +  + RKV
Sbjct: 785 ERTVGSRSVSGASSVRSRTSSESSWDGSTTRGSKPAKDRRNRKV 828


>At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 536

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 223 LLIRRPGHNLVWDDPLVRP 167
           +L+R  GH ++WDDPL++P
Sbjct: 244 ILVR--GHTVLWDDPLMQP 260


>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
           to heat shock protein 101 GI:6715468 GB:AAF26423 from
           [Arabidopsis thaliana]
          Length = 911

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 199 YVRVVVSAIPGVSQRRLGSGDDEIISGIADTKISKSXXETAALNVIN 339
           ++  VVS   G+   RLG  + E + G+AD    +   +  A+N ++
Sbjct: 536 HIAEVVSRWTGIPVTRLGQNEKERLIGLADRLHKRVVGQNQAVNAVS 582


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
           helicase, putative similar to SP|O75643 U5 small nuclear
           ribonucleoprotein 200 kDa helicase {Homo sapiens};
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF02889:
           Sec63 domain
          Length = 2171

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 187 PKRGYVRVVVSAIPGVSQRRLGSGDDEIISGIAD 288
           PK    R    A+ G+ Q++LG     I+SG AD
Sbjct: 112 PKTKETRAAYEAMLGLIQKQLGGQPPSIVSGAAD 145


>At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595; contains Pfam profile PF00331:
           Glycosyl hydrolase family 10
          Length = 576

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 205 GHNLVWDDPLVRPPRYSAL 149
           GHN++W+DP  +P   +AL
Sbjct: 291 GHNILWNDPKYQPKWVNAL 309


>At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 352

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 205 GHNLVWDDPLVRP 167
           GHN++WDDP  +P
Sbjct: 150 GHNVLWDDPKYQP 162


>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 576

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 205 GHNLVWDDPLVRP 167
           GHN++WDDP  +P
Sbjct: 291 GHNVLWDDPKYQP 303


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 TKGSSQTRLCPG-RRISNSRRQSTTPGIRR 260
           T  SS   + P  RR+SNSRR+S +  +RR
Sbjct: 239 TSQSSDASISPRKRRLSNSRRRSRSRSVRR 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,533,577
Number of Sequences: 28952
Number of extensions: 177472
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)