Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0378
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 30 1.3
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 30 1.3
U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-lik... 29 2.2
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82073-1|CAB04923.1| 444|Caenorhabditis elegans Hypothetical pr... 27 6.7
U80845-2|AAK39179.2| 582|Caenorhabditis elegans Hypothetical pr... 27 6.7
U29097-7|AAA68409.2| 344|Caenorhabditis elegans Serpentine rece... 27 8.9
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
K V +D +G+RLL FLC DED ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
K V +D +G+RLL FLC DED ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
K V +D +G+RLL FLC DED ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453
>U64601-9|AAB04578.1| 314|Caenorhabditis elegans Hypothetical
protein M03F4.7a protein.
Length = 314
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
D DSNG LD+ + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186
>AF228528-1|AAF34189.1| 314|Caenorhabditis elegans calumenin-like
protein protein.
Length = 314
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
D DSNG LD+ + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
F26H9.8 protein.
Length = 1377
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +3
Query: 294 ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVNIFSKLL 461
ADE K +T++ P +N +QI +D+ GK V ++ + P + D L I +++N S
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLN--SAKN 1080
Query: 462 YIKDCAPGYTENGFSKCAKYI 524
Y P N FS + ++
Sbjct: 1081 YFASPEPSEVINVFSLASGHL 1101
>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
F26H9.8 protein.
Length = 1377
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +3
Query: 294 ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVNIFSKLL 461
ADE K +T++ P +N +QI +D+ GK V ++ + P + D L I +++N S
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLN--SAKN 1080
Query: 462 YIKDCAPGYTENGFSKCAKYI 524
Y P N FS + ++
Sbjct: 1081 YFASPEPSEVINVFSLASGHL 1101
>Z82073-1|CAB04923.1| 444|Caenorhabditis elegans Hypothetical
protein W06D12.2 protein.
Length = 444
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 359 VYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAIDINLFMLGNKSM 195
V Y W + E F+F+S+ I F T S+T+A+ +F+LG S+
Sbjct: 241 VAYFAYFENWTLFESVYFFFISMTTIGFGDFTP----SHTVAVGGIVFILGGLSV 291
>U80845-2|AAK39179.2| 582|Caenorhabditis elegans Hypothetical
protein C24A8.1 protein.
Length = 582
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 279 FHTRNYIYQVVVYHCYRYQPVYV 211
F+TR + V+ +HC Y P+Y+
Sbjct: 128 FNTRTSYFLVIEHHCGIYNPIYM 150
>U29097-7|AAA68409.2| 344|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 27 protein.
Length = 344
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 463 YNNFENILTILPICNIS 413
YN+FEN+LT IC+++
Sbjct: 240 YNSFENVLTTKAICSVT 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,303
Number of Sequences: 27780
Number of extensions: 209392
Number of successful extensions: 649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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