Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0376
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    32   0.055
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    31   0.097
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.1  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   2.1  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    27   2.1  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   3.6  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   4.8  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   8.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   8.4  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   8.4  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 29/124 (23%), Positives = 51/124 (41%)
 Frame = +2

Query: 227 TVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKNNVERPDMIQLLMDAYKGTLKNESN 406
           T +N+     I +   +  R+ R  ++   D   K +V+   +I+ L D     +K    
Sbjct: 119 TETNLQYATNIGLNLLQQLRYLRLQLSEKEDLHKKLSVDNAHLIKQL-DLLSSNMKTLMK 177

Query: 407 ESDEKNVGFAMTEEMLKPKGNVRKWTQDELTAQVSSSSLRDLKAPANGLTLCIHELALNP 586
           E  +      + E+ L+  G ++K T+ E      +     L      L +C+HEL LN 
Sbjct: 178 EKTKVQGQRDLLEQRLQ--GLMKKLTEVESLTVSLNDEKNKLTLELTNLRICLHELQLNA 235

Query: 587 EAQE 598
           E  E
Sbjct: 236 EKGE 239


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
 Frame = +2

Query: 260 KVFPQKVTRFFREIVTSTMDYRLKNNVERPD-------MIQLLMDAYKGTLKNESNESDE 418
           K+F +K T    E + ST+   +K +++ P+       + +L +D Y   LK  SN+  +
Sbjct: 508 KIFKKKFTTIC-ERIESTLHELVKASLQTPEVFNISQSLFELFLDDYFLALKFSSNDQKD 566

Query: 419 KNVGFAMTEEMLKPKGNVRKWTQDELTAQV 508
            NV    TE +   K    +W    LT QV
Sbjct: 567 DNVSEIPTESLEYKKLRCLRW--KSLTEQV 594


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -3

Query: 383 LYKHPSVAESYPVFLRCSSIYNP*CWSRSL*RNELLFVEILLFYFLG*RWKLCSQYHFKS 204
           L K P++A  Y    R     N   + + L +NE L  +  ++  L     LC +  F+ 
Sbjct: 294 LSKFPNLASVYIPLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRK 353

Query: 203 LWPTCAK 183
            W  C K
Sbjct: 354 TWIICGK 360


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 18  KNIVEYLKGHQLEDVDVDDLMRR 86
           KN+ +Y +G++L+DVD +D + R
Sbjct: 374 KNLDDYGEGNRLDDVDAEDKIAR 396


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 224 CTVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKNNVE 343
           CT+  ++ +  I   P K+  F R I ++T+D  LK+ V+
Sbjct: 198 CTILYIAHDEFIAKHPDKIKAFLRAIHSATLD-MLKDPVQ 236


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 266 FPQKVTRFFREIVTSTMDYRLKNNVERPDM--IQLLMDAYKGTLK 394
           FP+KV +F+   V   +DY   N +   D+    LL+D + G LK
Sbjct: 296 FPEKVAKFYAAEVILALDYLHHNQIVYRDLKPENLLLDRF-GHLK 339


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 325 SIIHSA-GHDLSKETSYFLWKYFYSIFLANVGNCAANIILNL 203
           SI+H+  G  L   T++F+ +YF    +   G C   I +NL
Sbjct: 192 SILHTLYGQSLKHNTNFFI-EYFAMDLIMEGGECRGVIAMNL 232


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 404 CSHS*ESLYKHPSVAESYPVFLRCSSI 324
           C HS    + +P VA  Y  FLR  S+
Sbjct: 244 CLHSVPDAFTNPDVATLYQKFLRLQSL 270


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 518 KKMKLV-RSVRLGSIFLHSPLVLTSLLS*QNLHFFRLIR 405
           KK+K   +S  LGS+F  S + L S ++  N H+ R I+
Sbjct: 628 KKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIRCIK 666


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 395 NESNESDEKNVGFAMTEEMLKPKGNVR 475
           NE+ +SD K +  A+T  +L  K NVR
Sbjct: 101 NEALDSDAKKLRSALTSAILVEKPNVR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,526
Number of Sequences: 5004
Number of extensions: 43090
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)