Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0376
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 34 0.099
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 33 0.13
06_01_0208 - 1581686-1581715,1581891-1582091,1582628-1582966,158... 31 0.70
05_04_0137 + 18343106-18344686 31 0.70
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 31 0.92
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 29 2.8
02_05_1233 - 35112629-35112844,35112922-35112987,35113222-351132... 28 4.9
12_01_0324 - 2467104-2468633 28 6.5
11_03_0024 - 9035932-9035989,9036190-9036400,9038230-9038638 27 8.6
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 155 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKN 334
R+L W N H L IGCTV N+ ++ ++ P + +I+ + L N
Sbjct: 193 RVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADL-N 251
Query: 335 NVERPDMIQLLMDA 376
+ P +++L D+
Sbjct: 252 LKKTPQLVELFDDS 265
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 155 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRIKVFPQKVTRFFREIVTSTM--DYRL 328
++L +W N H L IGCTV N+ ++ + P + +I+ + D L
Sbjct: 220 KLLNLWEKNENHTLCLNSAKAIGCTVVNIGTQDLAEGRPHLILGLISQIIKIQLLADVNL 279
Query: 329 KNNVERPDMIQLLMDA 376
K+ P +++L+ D+
Sbjct: 280 KST---PQLVELVEDS 292
>06_01_0208 -
1581686-1581715,1581891-1582091,1582628-1582966,
1583274-1583558,1583769-1583984,1584395-1584739
Length = 471
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 60 VDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQA 179
+++ DL+ R T D I GFG ++N+L D + +A
Sbjct: 184 INIQDLLMRATMDSIFKVGFGFELNTLSGSDESGIQFSKA 223
>05_04_0137 + 18343106-18344686
Length = 526
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 54 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFS 188
E VD+ D +RR+ D I FG++ ++L++ E +A+F+
Sbjct: 175 EAVDLQDALRRFAFDSICHVAFGVESSTLLETAREDSGRHEALFA 219
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 30.7 bits (66), Expect = 0.92
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 359 QLLMDAYKGTLKNESNESDEKNVGFAMTEEMLKPKGNVRKWTQDELTAQVSSSSLRDLKA 538
Q+L D + +K+ +E++E T E L P + K T ++++ ++ +SSL L
Sbjct: 90 QVLADLFSFDIKDYLDETEEDT-----TSEALAPLSDDVKKTLEDISYRLEASSLDSLVV 144
Query: 539 PANGLTLCIHEL-ALNPE 589
+ +HE+ AL PE
Sbjct: 145 DCGSIRARLHEVQALIPE 162
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -1
Query: 352 IRSFYVVLQSIIHSAGHDLSKETSYFLWKYFYSIFLANVGNCAANIILNLCGQ 194
IR F++++ ++ D KET L + F SI AN+ A I L+L G+
Sbjct: 259 IRDFFILVDFVVLDINSD--KETPLILGRPFLSIVEANIDVGAGEIRLDLNGK 309
>02_05_1233 -
35112629-35112844,35112922-35112987,35113222-35113282,
35115319-35115401,35115483-35115563,35115661-35115693,
35115841-35115942,35116023-35116118,35116205-35116366,
35116469-35116660,35116742-35116852,35116940-35117011,
35117111-35117324,35117422-35117699
Length = 588
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 54 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYE 167
EDV+++ L R T DVI A F +SL DN E
Sbjct: 253 EDVEMESLFSRLTLDVIGKAVFNYDFDSL-SYDNGIVE 289
>12_01_0324 - 2467104-2468633
Length = 509
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 60 VDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTS 194
VD+ D+ RR+ D I FGL L D++ E A + S
Sbjct: 174 VDLQDVFRRFAFDTICKISFGLDPGCL-DREMPVSELADAFDAAS 217
>11_03_0024 - 9035932-9035989,9036190-9036400,9038230-9038638
Length = 225
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +3
Query: 27 VEYLKGHQLEDVDVDDLMRRYTXDVIASAGFG-----LQVNSLVDKDNEFYECGQAMFST 191
+E LK LE V+D +RY DV S GFG + K ++C +F +
Sbjct: 111 IEKLKNQVLE---VNDRRKRYKLDVSVSMGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVS 167
Query: 192 SWPQRFKMIL 221
P +++L
Sbjct: 168 QMPDMKRILL 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,266
Number of Sequences: 37544
Number of extensions: 252321
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -