Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0376
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  37   0.011
SB_1738| Best HMM Match : p450 (HMM E-Value=0)                         36   0.025
SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)                    36   0.025
SB_53615| Best HMM Match : GETHR (HMM E-Value=5.3e-09)                 32   0.31 
SB_34556| Best HMM Match : p450 (HMM E-Value=0)                        32   0.40 
SB_2334| Best HMM Match : p450 (HMM E-Value=0)                         32   0.40 
SB_35141| Best HMM Match : p450 (HMM E-Value=0)                        31   0.53 
SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)                29   2.9  
SB_57992| Best HMM Match : E2F_TDP (HMM E-Value=1.5e-09)               29   2.9  
SB_56677| Best HMM Match : p450 (HMM E-Value=1.1e-10)                  29   3.8  
SB_51175| Best HMM Match : p450 (HMM E-Value=0)                        29   3.8  
SB_2899| Best HMM Match : Spectrin (HMM E-Value=0.2)                   29   3.8  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              29   3.8  
SB_26806| Best HMM Match : Annexin (HMM E-Value=0)                     28   6.6  

>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 60  VDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYEC-GQAMFSTSW 197
           +D++D ++R   D++    FG+++NS+ D +  FY    ++  +T W
Sbjct: 187 IDMEDFVKRMALDIMGKVAFGIKINSIEDPNTPFYTALEESRSATHW 233


>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
          Length = 484

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTS-WPQRFKMILAAQ 230
           E  D  +L   +  DVI  + FG++ +   D D+ FY+  +  F T  W + F M   ++
Sbjct: 162 ESTDCVNLFSLFALDVITISAFGVETDIQTDPDSSFYKLAKKAFRTPIWVRAFSMFPFSE 221

Query: 231 F 233
           +
Sbjct: 222 Y 222


>SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)
          Length = 377

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTS-WPQRFKMILAAQ 230
           E  D  +L   +  DVI  + FG++ +   D D+ FY+  +  F T  W + F M   ++
Sbjct: 66  ESTDCVNLFSLFALDVITISAFGVETDIQTDPDSSFYKLAKKAFRTPIWVRAFSMFPFSE 125

Query: 231 F 233
           +
Sbjct: 126 Y 126


>SB_53615| Best HMM Match : GETHR (HMM E-Value=5.3e-09)
          Length = 653

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 467 NVRKWTQDELTAQVSSSSLRDLKAPANGLTLCIHELALNPEAQE 598
           N  K T DE+ AQ ++  L   +   N LT   + L +NPE QE
Sbjct: 59  NGGKLTADEVIAQSATFLLAGHETAGNALTFTTYHLVVNPEIQE 102


>SB_34556| Best HMM Match : p450 (HMM E-Value=0)
          Length = 408

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFS-TSWPQRFKMILAAQ 230
           E VD   L   +  +VI SA FG   +     D EF    + +F+  +W + F MI  A 
Sbjct: 89  ESVDCIRLFSLFALEVIMSAAFGYHADVQTAPDEEFVAKARNVFAIPAWRRFFSMIPFAD 148

Query: 231 F 233
           F
Sbjct: 149 F 149


>SB_2334| Best HMM Match : p450 (HMM E-Value=0)
          Length = 498

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 24/105 (22%), Positives = 50/105 (47%)
 Frame = +2

Query: 284 RFFREIVTSTMDYRLKNNVERPDMIQLLMDAYKGTLKNESNESDEKNVGFAMTEEMLKPK 463
           R F  +  +++ +++   + + + I+  +D  K  L    +++  +     +    + P 
Sbjct: 227 RMFLMLPFASVLFKIFRFLIQNNNIKYFIDLSKEILSKRHDKTFNRKDFVDLMLSAVNPD 286

Query: 464 GNVRKWTQDELTAQVSSSSLRDLKAPANGLTLCIHELALNPEAQE 598
           G+ RK +  E+ AQ  +  L   +  +N L+   + LALNPE QE
Sbjct: 287 GS-RKLSDPEIIAQSVTFLLAGHETSSNTLSATAYYLALNPEVQE 330


>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
          Length = 565

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/105 (21%), Positives = 49/105 (46%)
 Frame = +2

Query: 284 RFFREIVTSTMDYRLKNNVERPDMIQLLMDAYKGTLKNESNESDEKNVGFAMTEEMLKPK 463
           R F  +  +++ +++   +   + ++  +D  K  L    +++  +     +    + P 
Sbjct: 294 RMFLMLPFASVFFKIFRFLIHNNNMKYFIDLSKEILSKRHDKTFNRKDFVDLMLSAVNPD 353

Query: 464 GNVRKWTQDELTAQVSSSSLRDLKAPANGLTLCIHELALNPEAQE 598
           G+ RK +  E+ AQ  +  L   +  +N L+   + LALNPE QE
Sbjct: 354 GS-RKLSDPEIIAQSVTFLLAGHETSSNALSATAYYLALNPEVQE 397



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +3

Query: 18  KNIVEYLKGHQLEDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTSW 197
           K+I+ Y      E VD+  +  + T +VI S  FG+      + +N F +  + +F +  
Sbjct: 232 KSILYYESESNGESVDILGMFCQMTLEVILSTAFGIDSEVQKNPNNTFSDKAKEIFKS-- 289

Query: 198 PQRFKMILAAQFPTL 242
           P   +M L   F ++
Sbjct: 290 PTFLRMFLMLPFASV 304


>SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 57  DVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEF 161
           +V + D   + T DVI   GF + VNS+ D+++ F
Sbjct: 31  EVRMADEFAKVTLDVIGKVGFNIDVNSIGDENSPF 65


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 299  IVTSTMDYRLKNNVERPDMIQLLMDAYKGTLKNESNESDEKNVGFAMT 442
            + +S +DY   NN E  D  +  +D  +GT++N      E+   +++T
Sbjct: 1693 VTSSKLDYESVNNYELQDYQKFTIDTQRGTIRNAVVFDREEESRYSLT 1740


>SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)
          Length = 496

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   MIDISKNIVEYLKGHQLEDVDVDDLMRRYTXD 98
           ++DI++++V  LKG   + VD+++L  R+  D
Sbjct: 73  LVDITRSLVRELKGAPAQTVDLNELAVRFAVD 104


>SB_57992| Best HMM Match : E2F_TDP (HMM E-Value=1.5e-09)
          Length = 79

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   MIDISKNIVEYLKGHQLEDVDVDDLMRRYTXD 98
           ++DI++++V  LKG   + VD+++L  R+  D
Sbjct: 19  LVDITRSLVRELKGAPAQTVDLNELAVRFAVD 50


>SB_56677| Best HMM Match : p450 (HMM E-Value=1.1e-10)
          Length = 606

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 72  DLMRRYTXDVIASAGFGLQVNSLVDKDNEF 161
           D   R T DVI    F L + +L DKD+ F
Sbjct: 100 DQFHRITMDVIMKVAFSLDLKTLDDKDSTF 129


>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
          Length = 408

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 54  EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTSWPQRFKMILAAQF 233
           + VDV     ++T + I S  FG+   +  + +++F    Q  F    P  F  ILA  F
Sbjct: 82  KSVDVCRTYVKFTMETIVSTAFGIDCQTQTNPNDQFLSNAQRYFGK--PSPF-TILAVLF 138

Query: 234 PTL 242
           P L
Sbjct: 139 PYL 141



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 356 IQLLMDAYKGTLKN--ESNESDEKNV-GFAMTEEMLKPKGNVR-KWTQDELTAQVSSSSL 523
           +  ++DA +  +K+  E+     K++    ++ E     G  + K + DE+ AQ  +  L
Sbjct: 164 VMFIVDAARQIIKHRRETGSKGRKDLLEILLSAETTDDDGKRKNKLSDDEIVAQCFTFIL 223

Query: 524 RDLKAPANGLTLCIHELALNPEAQE 598
              +  +N +    + LALNP+ Q+
Sbjct: 224 AGFQNTSNTMAFTSYLLALNPDKQD 248


>SB_2899| Best HMM Match : Spectrin (HMM E-Value=0.2)
          Length = 139

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 227 TVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKNNVERPDMIQLL----MDAYKGTLK 394
           TV+++ ++  ++     V  F   +  S +D RLKN  +  DM+       MD YKG  +
Sbjct: 12  TVTSLERQKELESTWSAVKHFTEAV--SVLDRRLKNKFDEIDMLMKAGADSMDVYKGLKR 69

Query: 395 NESN 406
            ES+
Sbjct: 70  LESD 73


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 227  TVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKNNVERPDMIQLL----MDAYKGTLK 394
            TV+++ ++  ++     V  F   +  S +D RLKN  +  DM+       MD YKG  +
Sbjct: 2331 TVTSLERQKELESTWSAVKHFTEAV--SVLDRRLKNKFDEIDMLMKAGADSMDVYKGLKR 2388

Query: 395  NESN 406
             ES+
Sbjct: 2389 LESD 2392


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 227 TVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKNNVERPDMIQLL----MDAYKGTLK 394
           TV+++ ++  ++     V  F   +  S +D RLKN  +  DM+       MD YKG  +
Sbjct: 39  TVTSLERQKELESTWSAVKHFTEAV--SVLDRRLKNKFDEIDMLMKAGADSMDVYKGLKR 96

Query: 395 NESN 406
            ES+
Sbjct: 97  LESD 100


>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 829

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +2

Query: 221 GCTVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKNNVERPD-MIQLLMDAYKGTLKN 397
           GC++ +  +E     F   +      +  ST+ Y L     +P  +I+  +  +    + 
Sbjct: 100 GCSLEDDVKEETSGDFEDLLVALM-SVRISTLIYHLIKTPSKPIFIIKCKLTVFLWVYQG 158

Query: 398 ESNESDEKNVGFAMTEEMLKPKGNVRKWTQDE 493
           + +ESDE N   A  +     +  ++KW  DE
Sbjct: 159 KRDESDEINEDLAHKDAEALIEAGIKKWGTDE 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,214,560
Number of Sequences: 59808
Number of extensions: 305236
Number of successful extensions: 782
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)