Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0376
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67110.1 68414.m07635 cytochrome P450, putative similar to Cy...    33   0.14 
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    31   0.44 
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    30   1.3  
At4g30780.1 68417.m04361 expressed protein hypothetical protein ...    29   3.1  
At1g75380.3 68414.m08757 wound-responsive protein-related simila...    27   7.2  
At1g75380.2 68414.m08756 wound-responsive protein-related simila...    27   7.2  
At1g75380.1 68414.m08755 wound-responsive protein-related simila...    27   7.2  
At4g12700.1 68417.m01994 expressed protein                             27   9.5  
At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel...    27   9.5  

>At1g67110.1 68414.m07635 cytochrome P450, putative similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
          Length = 512

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +3

Query: 3   MIDISKNIVEYLKGHQLEDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFY 164
           M++ +K + E L+    E+V++ + MRR T D+I+   FG    S  DK  E +
Sbjct: 176 MVECTKMMAERLRKEVGEEVEIGEEMRRLTADIISRTEFG----SSCDKGKELF 225


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +2

Query: 155 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRIKVFPQKVTRFFREIVTSTMDYRLKN 334
           R+L  W  N  H L       +GC+V N+  ++  +  P  V     +++   +   L N
Sbjct: 187 RVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQVLADL-N 245

Query: 335 NVERPDMIQLLMDA 376
             + P +++LL D+
Sbjct: 246 LKKTPQLVELLEDS 259


>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 155 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRIKVFPQKVTRFFREIVTSTM--DYRL 328
           R+L  W  N  H L       +GC+V N+  ++  +  P  V     +++   +  D  L
Sbjct: 188 RVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLSL 247

Query: 329 KNNVERPDMIQLLMD 373
           K   + P +++L+ D
Sbjct: 248 K---KMPQLVELVED 259


>At4g30780.1 68417.m04361 expressed protein hypothetical protein
           F27D4.1 -  Arabidopsis thaliana,PID:g4115371
          Length = 589

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 431 NLHFFRLIRCSHS*ESLYKHPSVAESYPVFLRCSSIY 321
           N HF +L++C H    L + P +A   P F    SI+
Sbjct: 258 NKHFEKLVQCDHRLFHLSRQPEIAIDSPYFDARQSIF 294


>At1g75380.3 68414.m08757 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 346 SFYVVLQSIIHSAGHD--LSKETSYFLWKYFYSIFLANVGNCAANIILNLCGQLVLNIA 176
           + Y V++ ++   G++  L + T      YF  +FL+ VGN +  +  +L     +NIA
Sbjct: 173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231


>At1g75380.2 68414.m08756 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 346 SFYVVLQSIIHSAGHD--LSKETSYFLWKYFYSIFLANVGNCAANIILNLCGQLVLNIA 176
           + Y V++ ++   G++  L + T      YF  +FL+ VGN +  +  +L     +NIA
Sbjct: 173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231


>At1g75380.1 68414.m08755 wound-responsive protein-related similar
           to wound inducive gene GI:8096273 from [Nicotiana
           tabacum]
          Length = 325

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 346 SFYVVLQSIIHSAGHD--LSKETSYFLWKYFYSIFLANVGNCAANIILNLCGQLVLNIA 176
           + Y V++ ++   G++  L + T      YF  +FL+ VGN +  +  +L     +NIA
Sbjct: 173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231


>At4g12700.1 68417.m01994 expressed protein
          Length = 561

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 322 IIHSAGHDLSKETSYFLWKYFYSIFLANVGNCAANIILNLC 200
           +++S G D  K  ++FLW +  ++  A   N    + L LC
Sbjct: 257 LVYSGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLTLC 297


>At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel,
           putative (CNGC13) similar to CaM-regulated potassium ion
           channel (ACBK1) GI:8515883 from [Arabidopsis thaliana]
          Length = 696

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +2

Query: 290 FREIVTSTMDYRLKNNVERPDMIQLLMDAYKGTLK----NESNESDEKNVGFAMTEEMLK 457
           FR+ ++   +Y    N  RP +  +L +  +G  K       N+  + N      + ++ 
Sbjct: 11  FRDWISEGTEYGYGRNKARPSLNTVLKNVRRGLKKPLSFGSHNKKRDSNSSTTTQKNIIN 70

Query: 458 PKGN-VRKWTQDELTAQVSSSSLRDL 532
           P+G+ ++ W +  L A V + ++  L
Sbjct: 71  PQGSFLQNWNKIFLFASVIALAIDPL 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,173
Number of Sequences: 28952
Number of extensions: 218555
Number of successful extensions: 625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)