Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0370
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395           29   3.2  
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771...    28   4.3  
06_03_0002 - 15280292-15281550,15282714-15282840                       28   5.6  
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362...    28   5.6  
06_03_0397 + 20370146-20370256,20371223-20371312,20371411-203714...    27   9.9  

>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
          Length = 704

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 223 RCNLQDLFEGTGETPSAVCKEPLKC 297
           RC  Q+ FEG G T  A C+   KC
Sbjct: 236 RCECQEGFEGDGYTAGAGCRRVPKC 260


>02_02_0200 -
           7718760-7718816,7718910-7719011,7719643-7719726,
           7719821-7719916,7720016-7720066,7720162-7720302,
           7720717-7720773,7720864-7720938,7721033-7721305,
           7721382-7721441,7721531-7721620,7722519-7722638
          Length = 401

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 122 MDFFHSSLYHIPKHRTXLTQRMP 54
           M+F   SLY + KH + + QRMP
Sbjct: 149 MEFVPESLYRVLKHYSNMNQRMP 171


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 304 RVCTKLV*SFSLAGKYKLAILLSRPVRNIICV 399
           R C + V  + +AG+++ A++    V N ICV
Sbjct: 196 RCCNRCVHPYCIAGEHRAALIQPIDVENFICV 227


>04_01_0272 +
           3624910-3625247,3625286-3625853,3625920-3626895,
           3627053-3627087
          Length = 638

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 245 SKEQAKPPPLCVRSLSNASKEFALSLCSRFH 337
           S +Q   PP+ +R+ S+ S  + LSLCS  H
Sbjct: 86  SVDQTTSPPIPLRTPSSGSDTWFLSLCSGSH 116


>06_03_0397 +
           20370146-20370256,20371223-20371312,20371411-20371470,
           20371553-20371825,20371917-20371991,20372074-20372130,
           20372820-20372960,20373066-20373116,20373194-20373289,
           20373482-20373565,20375739-20375840,20376260-20376331
          Length = 403

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 122 MDFFHSSLYHIPKHRTXLTQRMP 54
           M+F   SLY + KH   + QRMP
Sbjct: 146 MEFVPESLYRVLKHYKDMKQRMP 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,334
Number of Sequences: 37544
Number of extensions: 247778
Number of successful extensions: 565
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)