Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0370
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.27
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 32 0.27
SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6) 32 0.36
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 1.4
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 66 RQXRTVLWYVVQTTVKKIHAYSHHLFALRTLSIAPD 173
R R VLW V + ++ + A+S+ LF+L + + PD
Sbjct: 171 RSERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +2
Query: 89 VCGTDYCE-KNPCIQPPLVCPKNTEHRXRHAGKXACCPACVTLXXEGA-TCK-IYSKEQA 259
VCG+D NPC+ C N +H GK +C +G CK I +K +
Sbjct: 180 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMIGNKPRC 239
Query: 260 KPPP 271
PP
Sbjct: 240 MRPP 243
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 89 VCGTD-YCEKNPCIQPPLVCPKNTEHRXRHAGKXA-----CCPAC 205
VCG+D NPC+ VC N + R +H G C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +2
Query: 89 VCGTDYCE-KNPCIQPPLVCPKNTEHRXRHAGKXACCPACVTLXXEGA-TCK-IYSKEQA 259
VCG+D NPC+ C N +H GK +C +G CK I +K +
Sbjct: 37 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMIGNKPRC 96
Query: 260 KPPP 271
PP
Sbjct: 97 MRPP 100
>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
Length = 410
Score = 31.9 bits (69), Expect = 0.36
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 51 WWHALRQXRTVLWYVVQTTVKKIHAYSHH 137
W HA R +VLW+++++ +KK++ + H
Sbjct: 135 WSHARRNFGSVLWWLLESRIKKVNKANRH 163
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 89 VCGTDYCE-KNPCIQPPLVCPKNTEHRXRHAGKXACC 196
VCG+D +N C L CPKN +H G A C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPC 1193
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +2
Query: 83 ALVCGTD-YCEKNPCIQPPLVCPKNTEHRXRHAGKXACCPACVTLXXEGATC 235
A VCGTD + CI C R +HAG+ C P + G C
Sbjct: 372 APVCGTDDRTYPSECIMKTSACADKKAVRVKHAGE--CGPCGTLVCTNGKNC 421
>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = +1
Query: 253 TGETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAILLSRPVRNIICVRNKIDNNMHCS 432
T E + ++ LK + VC K + G + L ++ V + N+H +
Sbjct: 244 TDEKKKTIFRDLLKLLDEVCKKAKCHVLIGGDFNLKYAIAETVVTEVVQERSNQYNLHTN 303
Query: 433 KYRNLKLKNM 462
Y+N K M
Sbjct: 304 GYQNKPRKKM 313
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 371 DRSIASLYFPANENDYTSLVQTLLMHLRGSLHTAEGVSPV-PSNKSC 234
D + + Y P E DY ++ H+ GS TA+ PV PS C
Sbjct: 1529 DGTCSVSYIPVEEGDYDIHIKFADEHIPGSPFTAKAGRPVDPSKVKC 1575
>SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 424 HCSKYRNLKLKNMN 465
HCSKYRN+K K +N
Sbjct: 264 HCSKYRNIKQKYIN 277
>SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 116 NPCIQPPLVCPKNTEHRXRHAGKXACCPACV 208
N C+ P L C N E+R R K CC + +
Sbjct: 162 NSCLNPFLYCLTNKEYR-REFTKLLCCKSAI 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,875
Number of Sequences: 59808
Number of extensions: 314197
Number of successful extensions: 826
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -