Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0370
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    31   0.67 
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   4.7  
At1g54890.1 68414.m06267 late embryogenesis abundant protein-rel...    28   4.7  

>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +2

Query: 44  IMLVACVASEXYGALVCGTDYCEKNP-CIQPPLVCP--KNTEHRXRHAGKXACCPACVTL 214
           ++ ++C   E +  + CGT+  +K P C +   + P  ++ +++  H      CP C  L
Sbjct: 457 MVTISCACGETHFEVPCGTETNQKPPRCRKLCHITPLCRHGQNQKPHKCHYGACPPCRLL 516

Query: 215 XXE----GATCKIYSKEQAKPPP 271
             E    G  CK+      +PPP
Sbjct: 517 CDEEYPCGHKCKLRC-HGPRPPP 538


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 151 LRANKWWLYAWIFFTVVC 98
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


>At1g54890.1 68414.m06267 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (EMB7) GI:1350543 from
           [Picea glauca]
          Length = 347

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +2

Query: 38  IFIMLVAC-VASEXYGALVCGTDYCEKNPCIQPPLVCPKN-TEHRXRHAGKXACCPACVT 211
           + +ML AC V  +   AL   T +  K+PC      CPK        +    AC   C  
Sbjct: 13  LVVMLYACIVVVQLEAALETKTCFQRKSPCFLKKQTCPKQCPSFSPPNGSTKACVIDCFN 72

Query: 212 LXXEGATCK 238
              + ATC+
Sbjct: 73  PICK-ATCR 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,917
Number of Sequences: 28952
Number of extensions: 204144
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)