Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0369
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 190 6e-49
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 190 6e-49
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 190 6e-49
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 190 6e-49
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 189 1e-48
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 189 1e-48
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 188 3e-48
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 186 7e-48
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 186 1e-47
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 93 2e-19
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 90 9e-19
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 90 9e-19
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 83 1e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 83 1e-16
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 63 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 2e-10
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 1.0
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 27 7.2
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 27 7.2
At1g16930.1 68414.m02053 F-box family protein contains F-box dom... 27 7.2
At5g51140.1 68418.m06341 pseudouridine synthase family protein l... 27 9.5
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 27 9.5
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 27 9.5
At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containi... 27 9.5
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 190 bits (463), Expect = 6e-49
Identities = 86/112 (76%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL+SEYQQYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 152 bits (369), Expect = 1e-37
Identities = 67/89 (75%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 190 bits (463), Expect = 6e-49
Identities = 86/112 (76%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL+SEYQQYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 152 bits (369), Expect = 1e-37
Identities = 67/89 (75%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 190 bits (463), Expect = 6e-49
Identities = 86/112 (76%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL+SEYQQYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 155 bits (375), Expect = 3e-38
Identities = 69/89 (77%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAMFRGK 320
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 190 bits (463), Expect = 6e-49
Identities = 86/112 (76%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL+SEYQQYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 152 bits (369), Expect = 1e-37
Identities = 68/89 (76%), Positives = 78/89 (87%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAMFRGK 320
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 189 bits (461), Expect = 1e-48
Identities = 84/112 (75%), Positives = 97/112 (86%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDIPP G+KMASTF+GN+T+IQ
Sbjct: 318 FRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQE 377
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL+SEYQQYQDA
Sbjct: 378 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 429
Score = 146 bits (354), Expect = 1e-35
Identities = 66/89 (74%), Positives = 77/89 (86%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT
Sbjct: 233 TMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQ 292
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 293 QMWDAKNMMCAADPRHGRYLTASAMFRGK 321
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 189 bits (460), Expect = 1e-48
Identities = 84/112 (75%), Positives = 98/112 (87%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDIPP+GLKMA+TF+GN+T+IQ
Sbjct: 318 FRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQE 377
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL++EYQQYQDA
Sbjct: 378 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 429
Score = 146 bits (355), Expect = 7e-36
Identities = 66/89 (74%), Positives = 77/89 (86%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT
Sbjct: 233 TMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQ 292
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + I G+
Sbjct: 293 QMWDSKNMMCAADPRHGRYLTASAIFRGQ 321
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 188 bits (457), Expect = 3e-48
Identities = 85/112 (75%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI PRGL MASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL+SEYQQYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 153 bits (372), Expect = 6e-38
Identities = 68/89 (76%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 186 bits (454), Expect = 7e-48
Identities = 84/112 (75%), Positives = 97/112 (86%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG++S KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDI P+GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL++EYQQYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 428
Score = 152 bits (368), Expect = 2e-37
Identities = 69/107 (64%), Positives = 84/107 (78%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTA 321
QM+DAKNMM A DPRHGRYLT + + G+ K++ + K +
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNS 338
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 186 bits (453), Expect = 1e-47
Identities = 84/112 (75%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI P GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQYQDA 590
+F+RVSEQF AMFRRKAFLHWYTGE + AESNMNDL++EYQQYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 428
Score = 151 bits (367), Expect = 3e-37
Identities = 67/89 (75%), Positives = 78/89 (87%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAVFRGK 320
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 92.7 bits (220), Expect = 2e-19
Identities = 37/97 (38%), Positives = 59/97 (60%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
T+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + +VPE+T
Sbjct: 234 TISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITT 293
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTS 291
+F+ NMM CDPRHG+Y+ + G+ + K + +
Sbjct: 294 SVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNT 330
Score = 64.5 bits (150), Expect = 5e-11
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ +A I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQ 578
I N TA+ +F R+ +F M+ ++AF+HWY GE + A ++ L +Y++
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 90.2 bits (214), Expect = 9e-19
Identities = 38/104 (36%), Positives = 62/104 (59%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQ 578
I N TA+ +F R+ +F M+ ++AF+HWY GE + A ++ L +Y++
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 90.2 bits (214), Expect = 9e-19
Identities = 38/104 (36%), Positives = 62/104 (59%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQ 578
I N TA+ +F R+ +F M+ ++AF+HWY GE + A ++ L +Y++
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 63.7 bits (148), Expect = 9e-11
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQ 578
I N+T++ +F R+ +F M+ ++AF+HWY GE + A ++ L +Y++
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP 380
C +RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 63.7 bits (148), Expect = 9e-11
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQ 578
I N+T++ +F R+ +F M+ ++AF+HWY GE + A ++ L +Y++
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 63.7 bits (148), Expect = 9e-11
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESNMNDLISEYQQ 578
I N+T++ +F R+ +F M+ ++AF+HWY GE + A ++ L +Y++
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 180
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 181 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 267
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 180
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 181 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 267
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Frame = +3
Query: 123 ADVARSSTVSSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDFRGRMSMKEVDEQLAN 302
A+V R +TV N+ + +S + + +G + +V E L
Sbjct: 282 ANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQR 341
Query: 303 IQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTAIQTIFKRVSEQFVAMF 473
I+ + F+EW P + ++A+ P +++ + + T+I+ +F + Q+ +
Sbjct: 342 IRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYDKLR 401
Query: 474 RRKAFLHWY 500
+++AFL Y
Sbjct: 402 KKQAFLDNY 410
>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|Q9ZWQ9 Flavonol synthase
(EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 364
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 111 RGVEMQARKRHHVHSQLPQISVQLSRKP 28
RGV + + K HH+H Q+P I + KP
Sbjct: 39 RGVVVSSLKTHHLHHQIPVIDLSKLSKP 66
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 520 FIHTSPVYQCKKAFRLNIATNCSDTLLNMVCMAVVLPMKVEAILRP 383
F HT P+ + +FR + +C + C+ + +EA LRP
Sbjct: 194 FTHTVPLIESLLSFRYEVPCHCGN---EFFCVIRAIRYHIEAALRP 236
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 210 RV*SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAV 365
R+ + RE R D+ R ++ K D L ++ KN +E++PN C + +
Sbjct: 200 RIQGTLREWVMR-DEVRRFIAKKFKDFLLTYVKPKNENGDIEYVPNKCSLEI 250
>At1g16930.1 68414.m02053 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 345 NNCKIAVCDIPPRGLKMASTFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEVWMKW 524
++ KIA+ GL S + ++ +Q I + + F + LH Y + W +
Sbjct: 279 DSSKIAMLGKFLTGLSTVSEMVISSDTLQVIHDYCKMEQLPQFSNLSRLHAYFEDTWWEM 338
Query: 525 SSRRAES--NMNDLISEYQQYQD 587
ES N++ L+ E+ + D
Sbjct: 339 LPTFLESFPNLHSLVMEFDCFPD 361
>At5g51140.1 68418.m06341 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 395
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -3
Query: 425 GRRVTNEGRSHFK-TPRRY----VTHGNLAVIGYPLDKIRAVFVLNIRQLLVNFFHRHSP 261
G+ + + FK PR Y V G + V G + + +++ Q + +F HRH P
Sbjct: 73 GKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDG---EIVPVSYIVKSSQKITHFLHRHEP 129
Query: 260 PEIVATVKYL 231
P ++ V L
Sbjct: 130 PVMIDDVVIL 139
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 219 SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYF 329
SS ++V DDF G + M EVD L N + T F
Sbjct: 173 SSAKDVGMCEDDFYGNLGMDEVDMALENYEELFGTAF 209
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 219 SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYF 329
SS ++V DDF G + M EVD L N + T F
Sbjct: 173 SSAKDVGMCEDDFYGNLGMDEVDMALENYEELFGTAF 209
>At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 395
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRPYRPY 438
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 281 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 327
>At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 490
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRPYRPY 438
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 376 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 422
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,404
Number of Sequences: 28952
Number of extensions: 305023
Number of successful extensions: 969
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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