Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0368
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.71 
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      30   1.6  
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)                        30   1.6  
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   2.9  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           28   6.6  
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)                   27   8.7  

>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 467 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNHSE 369
           LP  M   T +T PK + Q FR +KQ++  H +
Sbjct: 40  LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -3

Query: 272 WNSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 129
           W  AR  LV A T ++ PAD +L+ SPSR      CV    T  C +G
Sbjct: 745 WGRAR-TLVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = -3

Query: 281 VGMWNSARGRLVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGXPSMSPQK 105
           + + N  RGRL T++ G       +  +S S    L  +   P ++ R P G  S+SP  
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316

Query: 104 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHR 3
            SP+  P +  N N +    S +   +PH++   +R
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYR 352


>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = -3

Query: 281 VGMWNSARGRLVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGXPSMSPQK 105
           + + N  RGRL T++ G       +  +S S    L  +   P ++ R P G  S+SP  
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316

Query: 104 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHR 3
            SP+  P +  N N +    S +   +PH++   +R
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYR 352


>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 203 LLSPSRKHFLFICVEPGSTPRCPSGXPSMSPQKGSP 96
           L++P  K+F++ CV PG++ R P+  PS++    +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 269 NSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGXPSMSPQKGSP 96
           +S   RL+  +TG+ G A    + S + KH       P S P  P   PS    +G P
Sbjct: 257 DSVSSRLINRSTGNSGTASPTFITSSANKHAQL----PPSAPASPK--PSTPSSEGMP 308


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 164 VEPGSTPRCPSGXPSMSPQKGSPASQPYT 78
           + P S P  PS  P+ +   GSP  QP++
Sbjct: 77  LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105


>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
          Length = 1253

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 146 PRCPSGXPSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHTQKRV 9
           P    G    SP +GSP    + L R     +  +RR+ PH Q  V
Sbjct: 359 PHLLQGRMEASPLQGSPQVTNHNLARTKGQTSEGNRRHHPHIQAAV 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,989,551
Number of Sequences: 59808
Number of extensions: 431246
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)