Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0368
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    30   1.3  
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless...    27   7.2  
At2g23450.2 68415.m02800 protein kinase family protein contains ...    27   9.5  
At2g23450.1 68415.m02799 protein kinase family protein contains ...    27   9.5  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 543 TVTLFPHNTRQSVAFVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVETN*IKSLGNI 364
           T  LFP  ++   A +L+  N ++   +    + H N  E +Q    ++E +  K L N+
Sbjct: 232 TGNLFPTRSKYDEAMMLERRNMLLKMLKFGGNWKHINLEEDEQLCYNHIEIDIKKLLENL 291

Query: 363 G 361
           G
Sbjct: 292 G 292


>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
           protein, putative similar to notchless [Xenopus laevis]
           GI:3687833; contains Pfam PF00400: WD domain, G-beta
           repeat (8 copies)
          Length = 473

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = -3

Query: 281 VGMWNSARGRLVTAATGSMGP-------ADGALLLSPSRKHFLFI 168
           V +WN   G+ VT   G +GP       AD  LLLS S+   L I
Sbjct: 384 VRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKI 428


>At2g23450.2 68415.m02800 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 275 MWNSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTP 144
           +W   R  L+T   G++G   GA LL+     F F C    STP
Sbjct: 275 VWRHCRSNLITIVGGTVG---GAFLLAALA--FFFFCKRRRSTP 313


>At2g23450.1 68415.m02799 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 275 MWNSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTP 144
           +W   R  L+T   G++G   GA LL+     F F C    STP
Sbjct: 275 VWRHCRSNLITIVGGTVG---GAFLLAALA--FFFFCKRRRSTP 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,985
Number of Sequences: 28952
Number of extensions: 279333
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)