Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0366
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 41 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 2e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 39 5e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 38 0.001
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.006
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.018
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.024
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.032
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.042
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.097
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.68
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.2
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.6
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 27 2.1
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 3.6
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 8.4
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 8.4
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 8.4
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
S+ V N+ Y TPE+L+ F CG V + I D++T +GFA FS
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D +L+V NL+ T E+LR +F R G + +Y+ +D+ T ++GFA
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFA 246
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
V NL++ T +DL F CG++ I +P D + +GF FS + + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V NL++ TT E + +F +CGE+ I + DR+T+ GF
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGF 75
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 37.5 bits (83), Expect = 0.001
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +1
Query: 97 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
P R DG + + L + TT + LR FE+ GEV D + RD T SRGF
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGF 206
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
NLTY +DL+ +F G++ +++P D+ T +GFA
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.018
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ NL + +D+ VF GE DI + RD+ T +S+GFA
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFA 75
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.5 bits (73), Expect = 0.024
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*G 264
S P P+ D + V NL + E L R F CG + + I RD T +GFA
Sbjct: 259 SVSHPMPQ-DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 265 FSSVVTLKK 291
F + + K
Sbjct: 318 FKDTMGVDK 326
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.1 bits (72), Expect = 0.032
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V N+ + T ED++ +FE G++ +++ RD R S+GF
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGF 382
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V L R T +L FE+ G V D I RD+ + S+G A
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVA 284
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.7 bits (71), Expect = 0.042
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D V L V NL ++ E L+ F+R G+V + IP D+ + +G+A
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYA 136
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.097
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D ++ + L+Y T D+ R F R G + I + R++ T +S G+A
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYA 144
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.68
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
L V NL + TT DL+ F + G++ + + T + +GF F + T K
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
+L V NL ++T +DL F G + + + T E+RG+ FS
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFS 54
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 282 AEEALDTMDGRMLDGRELRVQMA 350
AEEA+++++G +DGR + V A
Sbjct: 161 AEEAMNSLNGTEIDGRPIAVDWA 183
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKKPW 297
T EDL +F R G++ + RD+ T +S +A F + +++K +
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAY 302
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
++ + NL + T L + + G V +I+IPRDR GF
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGF 54
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 459 NGCGYDCASXYDGGNETWTCACD 391
+GC + Y+GG +TW C+ D
Sbjct: 89 DGCNDLVPNVYEGGYKTWECSLD 111
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 142 DYLLLTRPCHRFVAEVFRNSF*VV*IFSSNQTN*II 35
D++ +T P H FV + RNS + + S+N +N I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 360 DHIAPSEREVPCRPTFVRPSCPGLLQRHDARKTSRSESSTFPCVPISGNVDITNFSAPFE 181
D+ +PS+ E+P R +P P L R + SR+++ + +S D T+ S ++
Sbjct: 297 DNNSPSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRS-QLNDLSAENDSTSNSTEYD 355
Query: 180 N 178
+
Sbjct: 356 D 356
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 484 QRVPGGRSPXHSRSALTXPDTEMSLWC 564
QR+P +P A T D+ MS WC
Sbjct: 840 QRIPKPSNPEFDSYAQTVKDSLMSGWC 866
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -1
Query: 262 LTKRILYFPLCTDLWECRYHQLLRTFRKRGVSLQASFGR*DYLLLTRPCHRFVAEVF 92
+T + L D W+ L R + G+ L +GR D L +R ++E F
Sbjct: 194 ITLIFCFSALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 70 ILLKMSYGRPPPRIDGMVSLKVDNLTYRTT-PEDLRRVFERCGEVGDI 210
ILL+ + + D M S + + L +R PED+R FE G GDI
Sbjct: 856 ILLENGFQKFVQAFDDMESSR-EGLGFRELIPEDIRAHFEDVGLPGDI 902
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,874
Number of Sequences: 5004
Number of extensions: 39181
Number of successful extensions: 131
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -