Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0366
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 5e-24
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 37 0.014
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 36 0.025
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 34 0.076
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 34 0.076
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.13
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.13
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.23
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7) 30 1.2
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 30 1.6
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02) 29 2.2
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 2.2
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 2.9
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 29 2.9
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 3.8
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 29 3.8
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 5.0
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 28 6.6
SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 28 6.6
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 27 8.7
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 8.7
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 107 bits (258), Expect = 5e-24
Identities = 53/91 (58%), Positives = 60/91 (65%)
Frame = +1
Query: 94 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSS 273
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR T ESRGFA F
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 274 VVTLKKPWTRWTDECWTAGNFAFRWRDMVAP 366
+ C A F FRWRDMV P
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V NL Y T DL +VFER G+V + I RD+ TRESRG A
Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVA 54
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/56 (42%), Positives = 29/56 (51%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
SL V NL+Y TT + L FE C I+ DR + ESRGF + V T KK
Sbjct: 290 SLIVRNLSYDTTTDSLGAAFEGCSNAKVIF---DRESGESRGFGFVDYDDVETAKK 342
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
D L V L TT E LR FE GE+ D+ + D T++SRGF
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGF 57
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D + L V L+Y TT E L+ F + GE+ + I D T RGFA
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFA 73
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 151 RTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
R ED+R FE+ G + D+++ +D+ T+E+RG
Sbjct: 33 RHNAEDIRSAFEQYGTIEDVWVVKDKATKENRG 65
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
D S+ + NL + E LR +F CG V + + RDR T +GF
Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGF 99
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 34.3 bits (75), Expect = 0.076
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 73 LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+L + YG + L V LT + + E LR+ FE+ GE+ + + RD T+ SRGF
Sbjct: 95 ILDIDYGTS--HFSSTLELSVIPLT-QASAEGLRQHFEKFGELKECVVMRDPVTKRSRGF 151
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVT 282
L V + Y + + LR+ F + GE+ + + +DR T++S+G+ GF ++ T
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGY---GFVTMAT 60
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 PEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
P DL F + G+V D+ I DR +R S+G A
Sbjct: 159 PRDLEEFFSKVGQVSDVRIISDRNSRRSKGIA 190
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V L Y TT +++ F R GE+ + D TR SRGF
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGF 158
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 73 LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 222
L ++ RP ++ L V L TT + L F + GEV D+YIP+
Sbjct: 183 LCEVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
EDLR FE G++ + I RD TRE++G+
Sbjct: 67 EDLRSKFESFGDIEYVQIVRDHKTRENKGY 96
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+L VDNL+ T D+ R F G+V ++I DR T +S+G
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKG 361
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDI 210
L V +L + TT ++LR FE+CGE+ I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 121 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 228
+S+K +N R T E+L +FE CG+V D ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/95 (28%), Positives = 40/95 (42%)
Frame = +1
Query: 40 FNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 219
F+L DL + + L + R P IDG S ++ +T + G V +Y+
Sbjct: 98 FSLEDLFPVRLDLTAA-NRSPIAIDGAFSARLSTITRDGEAVSCSSMVYVSGSVQAMYLS 156
Query: 220 RDRYTRESRGFAS*GFSSVVTLKKPWTRWTDECWT 324
+ +RG S GF S LK P TD+ T
Sbjct: 157 YESML--NRGILSHGFPSAEPLKNPSDEHTDDSAT 189
>SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7)
Length = 297
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/95 (28%), Positives = 40/95 (42%)
Frame = +1
Query: 40 FNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 219
F+L DL + + L + R P IDG ++ +T R + G V +Y+
Sbjct: 152 FSLEDLFPVRLDLTAA-NRSPIAIDGAFFARLSTITRDGEAVSCRSMVYVSGSVQAMYLS 210
Query: 220 RDRYTRESRGFAS*GFSSVVTLKKPWTRWTDECWT 324
+ +RG S GF S LK P TD+ T
Sbjct: 211 YESML--NRGILSHGFPSAEPLKNPSDEHTDDSAT 243
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
L V +LT + ++ +F G V + +P DR SRGFA
Sbjct: 1159 LYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFA 1201
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQ 344
+ E+AL MDG +DG+E+ VQ
Sbjct: 1210 ECEKALKHMDGGQIDGQEIAVQ 1231
>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
Length = 376
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 115 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR-DRYTRESRGFAS*GFSSVVTLKK 291
G LK+ LT TP D+ R G+ D IPR R + RG S +KK
Sbjct: 155 GRRQLKISLLTEPDTPVDIARARSPRGQEQDPKIPRGQRQNQTPRGQRQSKIPSQRHIKK 214
Query: 292 -PWT 300
PWT
Sbjct: 215 LPWT 218
>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -2
Query: 483 SQSESDCANGCGYDCASXYDGGNETWTCACD---RNDSCMAMRGDHIAPSEREVPCR 322
++ E + G + YDG T D ND + M G H AP R++ C+
Sbjct: 314 AKEELSKSRGKSHPFDEQYDGDRNTQIALMDMPHENDVVVEMNGRHAAPRHRKIRCQ 370
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 396 CDRNDSCMAMRGDHIAPSEREVP--CRPTFVRPSCP 295
C+ +D C G+ P E E P CR T + SCP
Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 222
+L V N+ TT DL+ FER GEV D+ I +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE 240
L V L+ TT DLR VFE+ G V I I D +E
Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQAKE 220
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -2
Query: 405 TCACDRNDSCMAMRGDHIAPSEREVPCRPTFVRPSCPGLLQRHDARKTSRSESSTFPCVP 226
TC C +++C+A RG+ + S + T+ S R + S+S S T
Sbjct: 1110 TCDCGEDETCVACRGEKHSDSTHALEDYTTYSIASSSRRFSRGSSENLSKSASVTSSTES 1169
Query: 225 IS 220
IS
Sbjct: 1170 IS 1171
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D +L ++ + + ED++++F G V + RDR T +S G+A
Sbjct: 24 DERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYA 71
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 91 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESR 246
G R V L V + +DLR +FE G++ ++ I +D+YT + +
Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHK 211
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 181 FERCGEVGDIYIPRDRYTRESRGFAS*GFSSV 276
F GE+ +YIP + T+E +G F+SV
Sbjct: 141 FSSSGEIASVYIPENLKTKERKGHCIVTFASV 172
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQMA 350
DAE+A+ +DGR + G+ +RV++A
Sbjct: 80 DAEDAVRELDGRYICGQRVRVELA 103
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 136 DNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSS 273
+ L + + L++VF G+V + +PR ++ E +GFA F S
Sbjct: 93 EKLPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFES 138
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G + + RD+ T ES +A
Sbjct: 131 TTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYA 164
>SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 76 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
LK + GR P D + + D+ + DLR RCG +P D+ R ++G
Sbjct: 485 LKQTGGRIPENKDSLGRDRRDSCGTKEL-RDLRDAIRRCGVTDSPTVPDDKGKRNAKG 541
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 76 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCG 195
+K+S+ R P+I S V T TTPE+LR++ E G
Sbjct: 1522 MKLSF-RTGPQIGRTKSGFVATYTSGTTPEELRKISENAG 1560
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQMA 350
DAE+A+ +DGR + G+ RV++A
Sbjct: 50 DAEDAVRELDGRYICGQRARVELA 73
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 514 HSRSALTXPDTEMSLWCEE 570
HS S+LT +TE++L+C+E
Sbjct: 282 HSSSSLTNEETEVNLYCDE 300
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 109 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
++G + L V N+ +D+ +F GE+ ++++ DR T +G+A
Sbjct: 290 VEGWI-LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYA 337
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQMA 350
+ E+A+D DG+ LDGR ++V A
Sbjct: 149 EMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = -2
Query: 492 NSLSQSESDCANGCGYDCASXYDGGNETWTCACDRNDSCMAMRGDHIA-PSEREVPCRPT 316
N++ Q +D + YDGGN TC CD + G + P + C+
Sbjct: 201 NNVDQDNNDDETITTTTNKNKYDGGNNDDTCNCDPKGTQRDANGTLVCDPIGGQCKCKSN 260
Query: 315 FVRPSC 298
+ C
Sbjct: 261 VIGQRC 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,315,528
Number of Sequences: 59808
Number of extensions: 307200
Number of successful extensions: 956
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -