Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0364
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    89   5e-19
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    28   0.90 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   3.6  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   3.6  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   4.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   6.3  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   8.4  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   8.4  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 89.0 bits (211), Expect = 5e-19
 Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
 Frame = +3

Query: 225 YLCSREGW*DAX-VVXIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQI 401
           Y+C R+       VV +D+ DP+N +RRPISADS I++P  K+IALK      AQ+ LQ+
Sbjct: 37  YVCVRDNPNGVNQVVIVDLEDPSNVLRRPISADSVILHPKKKIIALK------AQRQLQV 90

Query: 402 FNIEMKSKMXAHTMXXDXVFWKWISLNTLGSGHQDVXYHWSXEGDSXTR 548
           F++E K+K+ ++ M  D V+W WIS + +G       +HW+  G    +
Sbjct: 91  FDLEAKAKINSYVMNQDVVYWTWISDSVIGMVTDTSVFHWTVSGSDPVK 139



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = +1

Query: 115 MAQVLPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
           MAQ LPIRF E LQL +VGI P+S  F  +T+ESDK++CVR+
Sbjct: 1   MAQQLPIRFSEVLQLASVGIQPSSFGFANVTLESDKYVCVRD 42



 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 544 PGKMFDRHSSLADCQI 591
           P KMFDRHSSL   QI
Sbjct: 137 PVKMFDRHSSLNGTQI 152


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 366 KAGVEAQKTLQIFNIEMKSKMXAHTMXXDXVFWKWISLNTLGSGHQD 506
           K   E+  +     ++ K ++  HT     V W ++S  TL SG QD
Sbjct: 160 KESFESYSSASESPLKPKYRLTKHTQPCTSVCWNFLSKGTLVSGSQD 206


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 486 VCSVKSTSRKXCLRXWCAP 430
           VC +   SRK C R W  P
Sbjct: 268 VCQIHEESRKFCYRSWVRP 286


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 368 SWC*SSKNTSNLQHRDEIQNXGAHHXRRXCFLEVDFTEHTRLWSPRCGVP 517
           +W  ++   +  Q+R  +QN G        FLE+  TE+  ++  RC  P
Sbjct: 768 TWITNTTMIAQGQNRGIVQNFGVQD--EVLFLEISLTENWLIFVTRCNGP 815


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 311 DWSXNWICWIC 279
           DW+ NW+ W C
Sbjct: 22  DWAKNWVFWTC 32


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 290 CWICHINXDNXCVSPTFSRTQINLSDSMVRVLKEIEAGLIPTLVSC 153
           C I  +   + C SP  S T   L+     ++ + + G  P L+SC
Sbjct: 98  CTIYPLVFLHCCTSPNDSSTWDTLTKLKNEIINDFDKGNKPLLISC 143


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 137 RIGNTCAMFIDHSVLHKPKTKKRAT 63
           ++GN   M + H ++H P T+ RAT
Sbjct: 12  KVGN---MLLQHRIVHAPMTRLRAT 33


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 450 DXVFWKWISLNTLGSGHQDVXYHWSXEG 533
           D V W+W ++  L S  Q V  +++ +G
Sbjct: 171 DRVLWRWANVENLDSFLQQVYTYYTGKG 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,076
Number of Sequences: 5004
Number of extensions: 38440
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)