Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0364
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   28   5.0  
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_53069| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_10757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/42 (64%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
 Frame = +3

Query: 225 YLCSREGW*D-AXVVXIDMADPTNPIRRPISADSAIMNPASK 347
           ++C RE   + A VV ID+AD  NP RRPISADSAIMNP SK
Sbjct: 6   FICVREKVGETAQVVIIDLADANNPTRRPISADSAIMNPKSK 47



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 208 MESDKFICVREKVGET 255
           MESDKFICVREKVGET
Sbjct: 1   MESDKFICVREKVGET 16


>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1938

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = -3

Query: 293  ICWICHINXDNXCVSPTFSRTQINLSDSMVRVLKEIEAGLIPTLVSCKCS*NRIGNTCAM 114
            +C + H++  + C+ P  + + ++L D       + + G  P LV C     R G  CA+
Sbjct: 1823 VCHLHHVSWPDKCI-PELACSVLDLLDEAQT--SQQQCGNAPVLVQCSNGVGRSGTFCAI 1879

Query: 113  FIDHSVLHKPKTKK 72
                SVL + KT++
Sbjct: 1880 ---SSVLERLKTEQ 1890


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 224 NLSDSMVRVLKEIEAGLIPTLVSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATLLKSRT 45
           N++  M  + KEI  G+IPTL  C      I      F +H  +H  +T+ +    ++RT
Sbjct: 454 NITKGMSPIAKEIITGVIPTL--CFSLNALINPLLYAFRNHKFMHSLQTRLQLCRKRTRT 511


>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 194  KEIEAGLIPTLVSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATLLKS 51
            + +EAGLI T++        I NTC + I H++L     ++ +T LK+
Sbjct: 1026 RSVEAGLIKTVLKLVDGAEPIQNTC-LSILHNILDYDNDREYSTALKN 1072


>SB_53069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 404 EDLKCFLSFNTSFXFQXNDF---TSWIHDSRVCT 312
           ED +C   F+  F     D     +W+H+ RVCT
Sbjct: 45  EDRRCLQHFHVMFTTLSRDVYNTVTWLHNKRVCT 78


>SB_10757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 335 IHDSRVCTDWSXNWICWICH 276
           IHDS++  DW  ++I W+ +
Sbjct: 158 IHDSKLLVDWFASFILWVIY 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,383,775
Number of Sequences: 59808
Number of extensions: 289095
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)