Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0364
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   105   2e-23
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score =  105 bits (252), Expect = 2e-23
 Identities = 51/93 (54%), Positives = 63/93 (67%)
 Frame = +3

Query: 261 VVXIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMXAHT 440
           VV ID+AD  NP RRPISADS IM+P +K++ALK      + KTLQIFNIE+K+K+ AH 
Sbjct: 48  VVIIDLADTANPTRRPISADSVIMHPTAKILALK------SGKTLQIFNIELKAKVKAHQ 101

Query: 441 MXXDXVFWKWISLNTLGSGHQDVXYHWSXEGDS 539
              D V+WKWIS  T+        YHWS EGD+
Sbjct: 102 NVEDVVYWKWISEKTIALVSDTAVYHWSIEGDA 134



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 127 LPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGE 252
           LPI+F EHLQL N GI   +I+F+ +TMESDK I VRE +G+
Sbjct: 3   LPIKFHEHLQLPNAGIRVPNITFSNVTMESDKNIVVREMIGD 44



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 544 PGKMFDRHSSLADCQI 591
           P KMFDRH SLA  QI
Sbjct: 136 PVKMFDRHQSLAGTQI 151


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -3

Query: 350 DFTSWIHDSRVCTDWSXNWICWICHINXDNXCVSPTFSRTQINLS 216
           DFT+W +D + C     +W+  +  +N  +   +  + +  I LS
Sbjct: 155 DFTNWPYDQQSCPIVITDWVYGLGQVNLSDPATAAGYGKPTIRLS 199


>Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical
           protein R03E1.3 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 350 DFTSWIHDSRVCTDWSXNWICWICHINXDNXCVSPTFSRTQINLS 216
           DFT+W  D + C     +W+  +  +N  +  +   + +  I LS
Sbjct: 155 DFTNWPFDQQSCPIVIADWVYNLNQVNLSDPYILKEYGKPSIRLS 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,738
Number of Sequences: 27780
Number of extensions: 216739
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)