Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0364
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 350 DFTSWIHDSRVCTDWSXNWI 291
           DF+SW +D+  C     +W+
Sbjct: 172 DFSSWPYDTHRCRINFGSWV 191


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 595 NESGNRQATNACRTSFRVXESPSID 521
           N SGN    ++ R S    ES S+D
Sbjct: 540 NNSGNGNTNSSARDSSPAIESISVD 564


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 124 VLPIRFQEHLQLTNVGINPASISFN 198
           +L +  +  + L N G  P ++S+N
Sbjct: 81  ILAVNAEADITLKNAGTPPEAVSYN 105


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 124 VLPIRFQEHLQLTNVGINPASISFN 198
           +L +  +  + L N G  P ++S+N
Sbjct: 81  ILAVNAEADITLKNAGTPPEAVSYN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,425
Number of Sequences: 438
Number of extensions: 2597
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)