Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0364
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...   115   2e-26
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...   111   3e-25
At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase, p...    31   0.44 
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    29   1.8  
At5g04320.1 68418.m00424 expressed protein                             29   3.1  
At4g13920.1 68417.m02154 disease resistance family protein / LRR...    27   7.2  

>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1703

 Score =  115 bits (277), Expect = 2e-26
 Identities = 56/105 (53%), Positives = 68/105 (64%)
 Frame = +3

Query: 225 YLCSREGW*DAXVVXIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
           Y+C RE      VV IDM  P  P+RRPI+ADSA+MNP SK++ALK +     Q  LQIF
Sbjct: 38  YICVRETSPQNSVVIIDMNMPMQPLRRPITADSALMNPNSKILALKAQVPGTTQDHLQIF 97

Query: 405 NIEMKSKMXAHTMXXDXVFWKWISLNTLGSGHQDVXYHWSXEGDS 539
           NIE K+K+ +H M    VFWKWI+   LG   Q+  YHWS EGDS
Sbjct: 98  NIEAKAKLKSHQMPEQVVFWKWITPKMLGLVTQNSVYHWSIEGDS 142



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +1

Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
           PI  +E L L ++GIN   I+F  +TMESDK+ICVRE
Sbjct: 7   PITMKEVLTLPSIGINQQFITFTNVTMESDKYICVRE 43


>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1705

 Score =  111 bits (268), Expect = 3e-25
 Identities = 54/105 (51%), Positives = 66/105 (62%)
 Frame = +3

Query: 225 YLCSREGW*DAXVVXIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
           Y+C RE      VV IDM  P  P+RRPI+ADSA+MNP S+++ALK +     Q  LQIF
Sbjct: 38  YICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIF 97

Query: 405 NIEMKSKMXAHTMXXDXVFWKWISLNTLGSGHQDVXYHWSXEGDS 539
           NIE K+K+ +H M     FWKWI+   LG   Q   YHWS EGDS
Sbjct: 98  NIEAKAKLKSHQMPEQVAFWKWITPKMLGLVTQTSVYHWSIEGDS 142



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +1

Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
           PI  +E L L +VGI    I+F  +TMESDK+ICVRE
Sbjct: 7   PIIMKEVLTLPSVGIGQQFITFTNVTMESDKYICVRE 43


>At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase,
           putative Strong similarity to Arabidopsis 2A6
           (gb|X83096), tomato ethylene synthesis regulatory
           protein E8 (SP|P10967)
          Length = 345

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 204 HHGIGQVYLCSREGW*DAXVVXIDMADPTNPIRRPISADSAIMNPASKVIALKG 365
           +H   ++Y  S   W D+ V  +D  DP+NP   P++   A++  +  V++L G
Sbjct: 118 YHNNFELYSSSAGNWRDSFVCYMD-PDPSNPEDLPVACRDAMIGYSKHVMSLGG 170


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 99  GVINKHGASITDTVSRTFTAYQCGNQSCFYFFQ 197
           G++NK GAS+   V++T +  +  +Q  FY+ +
Sbjct: 276 GIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLE 308


>At5g04320.1 68418.m00424 expressed protein
          Length = 419

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 230 QINLSDSMVRVLKEIEAGLIPTL---VSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATL 60
           ++   +++++V K +E  ++P        K S +     C  F  H + HK   +KR T 
Sbjct: 62  ELGCKNALLKVKKHLEEQVLPRTHHESKDKVSASASDGDCKSFQVHDIKHKDTKRKRTTR 121

Query: 59  LKS 51
           +KS
Sbjct: 122 IKS 124


>At4g13920.1 68417.m02154 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 891

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 FKNIYSLPMWESILLLFLSTLSPWNRTS 223
           FKN +S+P  +S L+L L T + W   +
Sbjct: 37  FKNEFSIPSPDSDLMLILQTTAKWRNNT 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,499,026
Number of Sequences: 28952
Number of extensions: 203879
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)