Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0363
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.17
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.17
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 29 0.68
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 27 1.6
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.6
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 4.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 6.3
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 6.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 6.3
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.17
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASEMDGECVCCASFA 1570
Query: 400 SLANCSPINHGRANKTSQILLLFGMS-GIQQTP 495
+ CS + + S + ++G+ + +TP
Sbjct: 1571 NCVYCSRCSDSLLGEESTVSTMYGVKPTLPETP 1603
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.17
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASEMDGECVCCASFA 1570
Query: 400 SLANCSPINHGRANKTSQILLLFGMS-GIQQTP 495
+ CS + + S + ++G+ + +TP
Sbjct: 1571 NCVYCSRCSDSLLGEESTVSTMYGVKPTLPETP 1603
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 QPWQEWSDHYTCHRYR-CEIRDGKYFIAAVDVENQKYRK 282
+ +++W+ T + +R C+ D ++F+ A +N+KY+K
Sbjct: 97 EAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYKK 135
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 225 QRREILHSCCGCRKPKIPENALECHEYIEDENVEFPT 335
+RR LH +P ECHE I++E+V+ P+
Sbjct: 79 KRRIWLHGVLRFHRPLHLFQTSECHELIQEESVKSPS 115
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PWQEWSDHYTCHRYRCEIRDG 234
P+Q+W D+Y C Y +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
S +SSP T SP +S++ + + +S+ SSS S SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 511 WARHRPVSAGCRSFRTTAGFGSFCW-PF 431
+A + P S G SF + G G+ CW PF
Sbjct: 303 YADYLPKSYGMYSFLDSIGIGTACWLPF 330
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 4.8
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = -3
Query: 485 WMPLIPNNSRIWLVLLALPWFIGEQFARLPSGLHYSLSIYFDDATQ-SRTARGEFDILIF 309
W+ + N SRIW++ +++ W+ F S Y+ + ++ + TQ +R A+ L
Sbjct: 417 WLHFLHNFSRIWILHISVFWY----FTVYNSPTIYTPNFHYLEGTQPARAAKWCAPALAG 472
Query: 308 DV--FVAFQCVF--RYFWFSTSTAAMKYFPSLI 222
V F++F + YF + A P LI
Sbjct: 473 AVASFISFLALILEAYFVPRNNPGAQPVIPRLI 505
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 255 GCRKPKIPENALECHEYIEDEN 320
G K IP+N EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 531 FQETPDPGLATDRCLLDAAHSEQQQDLARFVGPSM 427
FQE G A + + D EQ+ DL FV P +
Sbjct: 754 FQEISHDGYANPKKISDFIEFEQELDLNEFVMPHL 788
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 485 WMPLIPNNSRIWLVLLALPWF 423
W LI N +RIW++ + W+
Sbjct: 509 WFHLITNFNRIWVIHFGMFWY 529
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,266
Number of Sequences: 5004
Number of extensions: 57522
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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