Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0363
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 5.8
U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z70266-1|CAB61045.1| 364|Caenorhabditis elegans Hypothetical pr... 27 7.7
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 27 7.7
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 27 7.7
AF083646-1|AAC32857.1| 364|Caenorhabditis elegans putative pota... 27 7.7
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 27 7.7
AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical
protein F42A8.1 protein.
Length = 370
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 121 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAVD--VENQKYRKTHWN 294
+ Y ACV R YQ + W+D + YRC DG+ ++ + + K R+
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGCIAHDKQRRVPLG 160
Query: 295 ATN 303
T+
Sbjct: 161 QTD 163
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
S ++SP + + +P TSTT + + +ST SSS+ S SS S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
S ++SP + + +P TSTT + + +ST SSS+ S SS S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527
>U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical
protein C24B5.1 protein.
Length = 427
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 371 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 267
IYF D Q R + IF+ F+A C F W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174
>Z70266-1|CAB61045.1| 364|Caenorhabditis elegans Hypothetical
protein C40C9.1 protein.
Length = 364
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
L+ R RR I + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +3
Query: 396 GQPGELFPDKP----WKGQQNEPNPAVVRNERHPADTGRWRAQGQASP-GIF 536
G +FP ++ Q +PNP+ + P D G+ +G+ SP G F
Sbjct: 4 GYSANIFPSSSSPTLYQSHQLQPNPSATMYQATPRDMGKPPVRGKTSPYGFF 55
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +3
Query: 396 GQPGELFPDKP----WKGQQNEPNPAVVRNERHPADTGRWRAQGQASP-GIF 536
G +FP ++ Q +PNP+ + P D G+ +G+ SP G F
Sbjct: 4 GYSANIFPSSSSPTLYQSHQLQPNPSATMYQATPRDMGKPPVRGKTSPYGFF 55
>AF083646-1|AAC32857.1| 364|Caenorhabditis elegans putative
potassium channel subunitn2P20 protein.
Length = 364
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
L+ R RR I + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +3
Query: 396 GQPGELFPDKP----WKGQQNEPNPAVVRNERHPADTGRWRAQGQASP-GIF 536
G +FP ++ Q +PNP+ + P D G+ +G+ SP G F
Sbjct: 4 GYSANIFPSSSSPTLYQSHQLQPNPSATMYQATPRDMGKPPVRGKTSPYGFF 55
>AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical
protein T20H9.1 protein.
Length = 312
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 380 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTS 255
SLS+ FD T+ + D++ D F + F WFST+
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTA 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,974,121
Number of Sequences: 27780
Number of extensions: 338778
Number of successful extensions: 1069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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