Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0359
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 100 2e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 100 2e-22
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 2.3
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.0
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 3.0
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 24 9.3
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 24 9.3
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 99.5 bits (237), Expect = 2e-22
Identities = 43/48 (89%), Positives = 44/48 (91%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 399
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK W
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108
Score = 73.7 bits (173), Expect = 1e-14
Identities = 34/60 (56%), Positives = 44/60 (73%)
Frame = +2
Query: 74 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 99.5 bits (237), Expect = 2e-22
Identities = 43/48 (89%), Positives = 44/48 (91%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 399
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK W
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108
Score = 74.5 bits (175), Expect = 7e-15
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +2
Query: 74 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 1.7
Identities = 20/50 (40%), Positives = 22/50 (44%)
Frame = -3
Query: 413 VPAPAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSA 264
VP PA G PP P P P + VPP +TA PVP SA
Sbjct: 1181 VPKPAAGVPPV---PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224
Score = 25.0 bits (52), Expect = 5.3
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = -3
Query: 446 GRSPLSEVDATVPAPAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDS 267
G P+ P P VG PP P P P +PP +A P P
Sbjct: 1187 GVPPVPPPSEAPPVPKPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSE 1245
Query: 266 A 264
A
Sbjct: 1246 A 1246
Score = 24.2 bits (50), Expect = 9.3
Identities = 18/65 (27%), Positives = 22/65 (33%)
Frame = -3
Query: 437 PLSEVDATVPAPAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALV 258
P+ P P + P +P P P VPP + A PVP S V
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP---PSEAPPVPKPSVGV 1207
Query: 257 WDQPP 243
PP
Sbjct: 1208 PPVPP 1212
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 135 APCTVSLFSEYTDTKGRATDRLISLL 58
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 73 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 183
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 148 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 243
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 203 SMSKNSRQPYCVSKEAGPKPVPNHGVPDV 289
+ S +S P VS + PKP+PNH DV
Sbjct: 185 TFSDSSLSP--VSCSSFPKPIPNHFENDV 211
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 124 GAGCSQAPPVRIQGAHTSGPGQ*CSRFYVQELE 222
G G S PP I+G S + RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,477
Number of Sequences: 5004
Number of extensions: 36363
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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