Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0359
(448 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 97 5e-21
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 2.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 2.0
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 28 2.7
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 4.7
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 4.7
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 27 4.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 27 4.7
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 6.2
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.2
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.2
U39676-2|AAB37031.1| 143|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 8.2
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 8.2
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 97.1 bits (231), Expect = 5e-21
Identities = 43/46 (93%), Positives = 43/46 (93%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 393
Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K
Sbjct: 60 QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLK 105
Score = 56.4 bits (130), Expect = 9e-09
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +2
Query: 83 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 404 PAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 273
P +G GA PP P AP P +++PPP G R P+ H
Sbjct: 151 PPRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 404 PAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 273
P +G GA PP P AP P +++PPP G R P+ H
Sbjct: 151 PPRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -3
Query: 410 PAPAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVWDQPP 243
P P G + + +P P +PPP T RP P S+ +W PP
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP 300
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -3
Query: 410 PAPAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVWDQPP 243
P P G + + +P P +PPP T RP P S+ +W PP
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP 310
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 301 IPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWAGA 408
+P GGG S Q A GN C GG AP +A A
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGGGA-APAPVYAAA 60
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -1
Query: 337 RTYGYHHHGHAEFGQQHVRYPMIRHWFGTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLE 158
R GY+ + RYP +R + L + A LPR++ R+ + + R + R
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433
Query: 157 YERE 146
Y E
Sbjct: 1434 YSNE 1437
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 131 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 30
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 287
HHD +++H + + HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 316 GGGTHRSGQGAFGNMCRGGRMFAPTKPWAGAG 411
GGG R G G+ M RGGR+ P G G
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRPAGTLPGGG 2188
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 316 GGGTHRSGQGAFGNMCRGGRMFAPTKPWAGAG 411
GGG R G G+ M RGGR+ P G G
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRPAGTLPGGG 2188
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +2
Query: 68 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 241
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = -3
Query: 437 PLSEVDATVPAPAQGFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVP 276
P S A P P R P +AP P PP TR AT RP P
Sbjct: 286 PSSGTSAPQPPPRGSTAAPGTRAPP--ATRAP-PATRAPPATTRAPPATTRPAP 336
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 174 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 61
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 174 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 61
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>U39676-2|AAB37031.1| 143|Caenorhabditis elegans Hypothetical
protein C23F12.3 protein.
Length = 143
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 167 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGPKPVPN 271
P VN SM++N+RQ C ++ P PVP+
Sbjct: 12 PASKSAVNG-QASMAENNRQTRCANQLPPPAPVPD 45
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 183 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 70
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 183 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 70
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,937
Number of Sequences: 27780
Number of extensions: 238211
Number of successful extensions: 822
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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