Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0354
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   1.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   3.2  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   7.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.9  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   9.9  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 206 CQLCIKKCS*QSTQHVDLLVALISPLMERYAAKS 105
           C +C+KKC   +   ++L   L S +  RY+A S
Sbjct: 58  CGICVKKCPFGAINIINLPTNLESEVTHRYSANS 91


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 251  ICFHSHYHNLNGAALCQLCIKKCS 180
            +CF SH  + NG   C L +++C+
Sbjct: 1849 LCFQSHCCSFNGIGECNLHMQQCA 1872


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/75 (21%), Positives = 30/75 (40%)
 Frame = -1

Query: 324 LQNVSLTKISKPTRRKYKINPKIKHLLPQSLSQSQRRRVMPTLY*EMFVTVHSARRPPGG 145
           + N + +K S       K N ++K     ++ +    R+ PTL+     + H    P   
Sbjct: 260 IMNQTSSKFSDAIDEVQKYNERVKESTLTAIIEPTSNRINPTLHSGRQSSYHMPESPKTP 319

Query: 144 SDQPPDGEVCGEEYQ 100
             + PD +    E+Q
Sbjct: 320 IAESPDHDNWDNEFQ 334


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -2

Query: 236 HYHNLNGAALCQLCIKKCS*QSTQHVDLLVALISPLMERYAAKSISKKN 90
           H+  + G+ +C++  KKC  +S  H+  +    +P +       + K N
Sbjct: 99  HWTRIQGSEMCKILDKKCP-ESAPHLPFVAFRYAPPLTEDMLDELKKAN 146


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 374 DVELNERRPPNSLFSSSNL 430
           D+EL +R PP+S  +SS++
Sbjct: 152 DIELTQRTPPSSSHTSSSI 170


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 303  KISKPTRRKYKINPKIKHLLPQSLSQSQRRRVMPTL 196
            K +KPT+  + + P++K LLP     S      P L
Sbjct: 1002 KPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNL 1037


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +3

Query: 297  LSWSTKRSAKPH-V*RMHVD*TTKIRLTSN*MKEDHQTVFLVRQIYGYTKVRAMYREFIE 473
            L W  K     H V   + D    +   +N + E+H   FL+ Q       R + +  I 
Sbjct: 1181 LHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIG 1240

Query: 474  IIKL*RRQKRALSK 515
            II + + Q   LSK
Sbjct: 1241 IISIYKSQVELLSK 1254


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 341 NARRLDNEDPPDVELNERRPPNSLFSSSNLRVYQGTGDVPRV 466
           N   L+N    D    +++PPN + +  + R     GD  R+
Sbjct: 257 NPELLNNSCGADFVRTQQKPPNGISAPKHARCASFDGDADRI 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,159
Number of Sequences: 5004
Number of extensions: 39261
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)