Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0354
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    32   0.35 
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931     28   4.4  
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    28   5.8  
05_04_0106 - 18034965-18034975,18035128-18035323,18036320-180364...    28   5.8  
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458...    27   7.6  

>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 282 RKYKINPKIKHLLPQSLSQSQRRRVMPTLY*EMFVTVHSARRPPGGSDQPPDGEV 118
           R+Y I P++   + Q L ++QRR + PT   E+     S R  P   ++PP G +
Sbjct: 5   RRYAIAPQLD--IEQILKEAQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSL 57


>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
          Length = 461

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 135 PPD---GEVCGEEYQQEECGFPEVRDQDPC 55
           PPD   G  C  EYQ EEC  PE R ++ C
Sbjct: 262 PPDEKSGTACKVEYQVEECS-PENRAKNEC 290


>06_03_0875 -
           25584789-25585307,25585424-25585570,25585734-25585897,
           25586015-25586172,25586536-25586904,25586998-25587209,
           25587439-25588059,25588561-25588699,25588968-25589044,
           25589120-25589800,25590641-25590889
          Length = 1111

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 368 PPDVELNERRPPNSLFSSSNLRVYQGTGDVPRVHRN 475
           PP  E  E RPP+S  + +     +  GDV R+ RN
Sbjct: 9   PPAAEQEEARPPSSTAAVAEEDEEEEEGDVCRICRN 44


>05_04_0106 -
           18034965-18034975,18035128-18035323,18036320-18036412,
           18037219-18037264,18037411-18037538,18037892-18037959,
           18038058-18038084,18038181-18038291,18038404-18038482
          Length = 252

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -2

Query: 170 TQHVDLLVALISPLMERYAAKSISKKNAVSQKCATRIRADI 48
           TQ+ ++ +A++ P  +R   +S+ + +   + C   +RADI
Sbjct: 167 TQYAEIPLAVVRPPYQRVGFESVGEVDTKGKICRIPVRADI 207


>01_06_0840 +
           32343700-32344138,32345329-32345419,32345584-32345866,
           32346023-32346097,32346470-32346514,32346889-32346979,
           32347060-32347118,32347621-32347704,32348109-32348168,
           32348585-32348637,32348724-32348757,32349334-32350335,
           32350477-32351035,32351873-32352372,32352793-32353200
          Length = 1260

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 171 HSARRPPGGSDQPPDGEVCGEEYQQEECGFPEVRDQDPC*HRYLRSLN 28
           H  +   G ++Q    EVC    +  ECG  ++ +++   ++YL ++N
Sbjct: 548 HDGKSALGWAEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATIN 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,842,383
Number of Sequences: 37544
Number of extensions: 268282
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)