Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0354
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             31   0.63 
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         29   3.4  

>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = -1

Query: 285 RRKYKINPKIKH----LLPQSLSQSQRRRVMPTLY*EMFVTVHSARRPPGGSDQPPDGEV 118
           +RKYK   + +     +LP SLS + +  V+P L+  +          P GS +P +G+V
Sbjct: 213 KRKYKQGAERRRDTIAILPHSLSYAIKEEVLPMLHDNVQGITCDI---PQGSRRPEEGKV 269

Query: 117 CGEEYQQEECGFPE 76
             EE  +E   FP+
Sbjct: 270 DSEEKVEEPETFPD 283


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 210 VMPTLY*EMFVTVHSARRPPGGSDQPPDGEVC 115
           V+PTL         S RRPP  +  PP G VC
Sbjct: 210 VLPTLPPTKAPPPRSTRRPPPDTPAPPSGGVC 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,211,678
Number of Sequences: 59808
Number of extensions: 303140
Number of successful extensions: 767
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)