Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0354
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.      28   3.9  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    28   5.2  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   6.9  

>Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical
           protein C23H4.1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 313 FVDQDKQANKEEIQNQS*D*ASASTVIITISTAPRYANSVL 191
           FV+Q+ Q  K+ I +Q+ D    +T      +APRY++S L
Sbjct: 260 FVEQEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSL 300


>AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 313 FVDQDKQANKEEIQNQS*D*ASASTVIITISTAPRYANSVL 191
           FV+Q+ Q  K+ I +Q+ D    +T      +APRY++S L
Sbjct: 260 FVEQEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSL 300


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 343 ILHT*GFAERFVDQDKQANKE 281
           + HT G A RFVDQ+K  N E
Sbjct: 266 LCHTGGLAYRFVDQEKYNNSE 286


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 206 CQLCIKKCS*QSTQHVDLLVALISPLMERYAAKSISKKNAVSQKC 72
           C +C+KKC   + + ++L   L +    RY+  S       + +C
Sbjct: 69  CGICVKKCPYDAIKIINLPANLANETTHRYSQNSFKLHRLPTPRC 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,931,607
Number of Sequences: 27780
Number of extensions: 231797
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)