Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0354
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    30   1.2  
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    29   2.8  
At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr...    29   2.8  
At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr...    29   2.8  
At3g44200.1 68416.m04739 protein kinase family protein contains ...    28   4.8  
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr...    27   6.4  

>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 312 SLTKISKPTRRKYKINPKIKHLL----PQSLSQSQRRRVMPTLY 193
           S+   S   RRK +  P++ H+L    P S  +S+R   MP LY
Sbjct: 117 SVMSTSSNRRRKQQPKPRLPHILSESSPSSSPRSERSNFMPNLY 160


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -1

Query: 240 QSLSQSQRRRVMPTLY*EMFVTVHSARRPPGGSDQPPD--GEVCGEEYQQEECGFPEVRD 67
           ++L+ +++RR  P L   +  T+ + +RP   SD+  D      G+ Y+ EE G PE   
Sbjct: 12  KNLANAKKRRTGPHLPSSILKTIANEKRPL-NSDEGDDEIDSAYGDFYEYEE-GVPEEES 69

Query: 66  QDPC*HRYLRSLNTKF 19
           +    +RY R +N +F
Sbjct: 70  RKN--NRYERVVNYEF 83


>At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -1

Query: 324 LQNVSLTKISKPTRRKYKINPKIKHLLPQSLSQSQRRR 211
           L + + + +S  +RRK KIN    HLLPQ +++ +R+R
Sbjct: 77  LPSSTSSPLSAHSRRKRKIN----HLLPQEMTREKRKR 110


>At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 358

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -1

Query: 324 LQNVSLTKISKPTRRKYKINPKIKHLLPQSLSQSQRRR 211
           L + + + +S  +RRK KIN    HLLPQ +++ +R+R
Sbjct: 128 LPSSTSSPLSAHSRRKRKIN----HLLPQEMTREKRKR 161


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 294 KPTRRKYKINPKIKHLLPQSLSQSQRRRVMPTLY*EMFVTVHSARR 157
           KP   +   +P  KH   +++S  +R+R  PTL     +  H +R+
Sbjct: 463 KPRNDRISPSPAAKHEAEEAMSVKRRQRTPPTLPRRTSLIAHQSRQ 508


>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 435

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 321 QNVSLTKISKPTRRKYKINPKIKHLLPQSLSQSQRRR 211
           QNVS T+I K TRR +K + ++   + Q L    R+R
Sbjct: 100 QNVSSTRIEKKTRR-FKRSTELTPAITQRLQVKSRQR 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,691
Number of Sequences: 28952
Number of extensions: 212628
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)