Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0353
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    32   0.31 
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    29   2.2  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    29   2.2  
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    29   2.9  
AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...    29   2.9  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   3.9  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    28   3.9  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    27   6.7  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical p...    27   8.9  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
            protein Y110A7A.16 protein.
          Length = 1250

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +3

Query: 348  RGTAVFKSSGGCSLSWFGCWEMS-------ATGRLIL*LAVRTVFFVFRVKYTLIKKREP 506
            R  A+F    G S     CWEMS       A+ R +   A +      ++  TL + R+P
Sbjct: 943  REAALFYELSGNSEKTLKCWEMSRDVDGLAASARRLAVDAGKLKIHAIKMSTTLREARQP 1002

Query: 507  ETLAKSCKARGSN 545
            + LAK+ K  GS+
Sbjct: 1003 KELAKALKLAGSS 1015


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -2

Query: 334 LNARSTSILVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 155
           +++ +++I +  +S  +  S T+ A   L  + ++T   T A NG   S  G+  +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232

Query: 154 TARRAYSKARMACDTGGKASWLLKAW 77
            +    S    A     K+  L   W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 TLSPFPSDAPLTSMDVERALSFAPRRGTA 359
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 TLSPFPSDAPLTSMDVERALSFAPRRGTA 359
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 498 REPETLAKSCKARGSNL 548
           R PE   KSCKARGS+L
Sbjct: 8   RAPENSTKSCKARGSDL 24


>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 498 REPETLAKSCKARGSNL 548
           R PE   KSCKARGS+L
Sbjct: 8   RAPENSTKSCKARGSDL 24


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 220 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 95
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 329  VELRSASWHRGLQELWR 379
            VE R+ASW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 329  VELRSASWHRGLQELWR 379
            VE R+ASW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 476 NTENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATTRSEAQRALY 318
           N+ENEK R+  E +      R     E +QR  + A  +R      E + A Y
Sbjct: 155 NSENEKERNRREREEQQTKERERRLEEEKQRRDAEAEAERRRKEEEELEEANY 207


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 450  EQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRSGTET 277
            E+R  +L+GQSP F  +R       +   R R  +A++   +A+     E R+   +T
Sbjct: 1383 EERSGLLAGQSPDFSEVRAQIEEENRMKERSRKREAKK---KAVEKEKKEHRKEPKKT 1437


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 264 FEVTLSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSGGCSLSWFGCWEMSAT 422
           F V L  F    P  SM+ ++A   A  +  + F    G  ++WF CW ++ T
Sbjct: 188 FVVLLEEFEVPMPAFSME-KKAFYTAKMKIFSQFPYLLGIMIAWFVCWILTIT 239


>Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 502 SRFLISVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGA 338
           SR+      +    NTV TA  N KR +A    H   ++ +    L TA+P + A
Sbjct: 103 SRYFPEFGTSLNVNNTVYTADENKKRDLAAFFAHAIQETGENNNYLYTALPDQEA 157


>Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical
           protein T26F2.1 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 502 SRFLISVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGA 338
           SR+      +    NTV TA  N KR +A    H   ++ +    L TA+P + A
Sbjct: 103 SRYFPEFGTSLNVNNTVYTADENKKRDLAAFFAHAIQETGENNNYLYTALPDQEA 157


>Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 502 SRFLISVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGA 338
           SR+      +    NTV TA  N KR +A    H   ++ +    L TA+P + A
Sbjct: 103 SRYFPEFGTSLNVNNTVYTADENKKRDLAAFFAHAIQETGENNNYLYTALPDQEA 157


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical protein
            F41H10.3b protein.
          Length = 1005

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 468  KRKTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPY-SSEERR 292
            +R  P  +   +L+  + T P ++    NS QS  RPR       ++ A  P  ++ +RR
Sbjct: 931  RRWDPLPKSSGVLAHSNSTIPYVQRVPNNSTQSDFRPRSFSQNSVASPAPAPVPNAIKRR 990

Query: 291  SG 286
             G
Sbjct: 991  EG 992


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 290 ERRSSDEYGRRARVELRSASWHRGLQELWRLFAVVV 397
           E+     Y  RA V+ +S +W    Q+L RLF   +
Sbjct: 244 EKHCDGSYKFRAIVDFQSVNWGNAAQDLSRLFVTAM 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,280
Number of Sequences: 27780
Number of extensions: 222013
Number of successful extensions: 676
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)