Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0351
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    29   0.39 
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   2.1  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   2.7  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   2.7  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   6.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   8.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   8.4  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = +1

Query: 214 C*SKSPNSTSRDKIVVETG-ENRQFIHINEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKI 390
           C + +P++++   ++ E    N+ F+ + E  I   + D    EK+     +   D++ +
Sbjct: 704 CNTNNPDASTSVPVLEELQLRNKLFLTLLEDSI--GDGDVTEDEKISIARLEANIDKALL 761

Query: 391 RLLLKLCLEDRFKNINK-QKTL 453
           +L+ K CLE+R + + +  KTL
Sbjct: 762 QLIQKACLEERIERVYELTKTL 783


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 333 LAIMFLYDYRRFIYVDKLSIFSCFYYD 253
           L + F Y Y +F++V + S  S +YY+
Sbjct: 205 LKLFFRYQYSQFLFVYRESFLSDYYYN 231


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +1

Query: 214 C*SKSPNSTSRDKIVVETGENRQFIHINEPPIIVQEHDSQPQEKVCST-TKDVFWDRSKI 390
           C S +PN  +R  +VVE  E      I    + +    + PQ+++     K+  WD    
Sbjct: 687 CFSDTPNKKNRITMVVEPLEKGISNDIENGKVNI----NWPQKRISEFFQKNYDWDLLAS 742

Query: 391 RLLLKLCLEDRFKNINKQKTLWHDIASHV 477
           R +     +DR  NI +  TL  D+  +V
Sbjct: 743 RSIWAFGPDDRGTNILRDDTLSTDVDKNV 771


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 390 YFASIPKDVFSSTTNFFLWLAIMFLYDYRRFIYVDKLSIF 271
           YF  +P    + TT  FL ++ +++   R  IYV    IF
Sbjct: 254 YFVRLPWLFLNPTTLLFLLISFVYIKPARLLIYVPLFFIF 293


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  PCNYVYKVFILNTILLFFRTLSCKY 97
           P  +  ++ I+NTI++ F T+ C Y
Sbjct: 30  PLTWPIRIRIINTIIISFMTMLCMY 54


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 MNNPPNQSYWFVLREDQSNVILSTNNFVNQN 226
           M N P+  YW  L    S ++ ++ N+++ +
Sbjct: 121 MANDPSMKYWLKLTNQLSGLLCASLNYIDSS 151


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 NQSYWFVLREDQSNVILSTNNFVNQNPQIPLQ 244
           N+S W +  +++  +I + N ++  NP  P+Q
Sbjct: 306 NRSPWTI--QEKEKLIKTVNQYLQSNPSSPIQ 335


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 311 IIGGSFMWINCLFSPVSTTIL 249
           IIGGSF++ + L+ P++  +L
Sbjct: 363 IIGGSFLYGSALYHPLTKNLL 383


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 350 QTFSCGWLSCSCTIIGGS-FMWI 285
           Q F+ GW    C I+G S F+W+
Sbjct: 230 QPFNVGWYENWCQIMGKSPFLWL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,125
Number of Sequences: 5004
Number of extensions: 40503
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)