Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0350
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.3  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   4.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   5.7  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   10.0 
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   10.0 

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 200 LAIMFLYDYRRFIYVDKLSIFSCXYY 123
           L + F Y Y +F++V + S  S  YY
Sbjct: 205 LKLFFRYQYSQFLFVYRESFLSDYYY 230


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 157 WINCLFSPVXTTYLV 113
           ++NCLF+P+   YLV
Sbjct: 420 FLNCLFAPIVAIYLV 434


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 155 DKLSIFSCXYYVSCLLKWNLGIXINK 78
           D L   S  YYV+ L+ W++G  +++
Sbjct: 796 DTLIYHSWCYYVAALVLWSIGFALDE 821


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 149 LSIFSCXYYVSCLLKWNLGIXI 84
           L I S   YVS ++ WN+ + +
Sbjct: 28  LKILSTILYVSAVISWNVSLKV 49


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 138 ENRQFIHINEPPII 179
           ENR  +H+N PP I
Sbjct: 451 ENRSLLHLNRPPPI 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,269,303
Number of Sequences: 5004
Number of extensions: 19342
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)