Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0350
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)                     27   5.6  

>SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +3

Query: 48  QSNVILSTNNFVNXNPQIPLQETRYVVXTGENRQFIHINEPPIIVQEHDSQPQXKVCSTT 227
           +S+ I S+ N  + NP+     T     + E R+F  +  P I ++E   + + ++C+++
Sbjct: 225 RSHSIASSQNNNHTNPK---PGTNISPGSPERREFAQVTGPRIEIEEDPERIEIQICASS 281

Query: 228 KDVFWDRS 251
             +  D S
Sbjct: 282 TSIEQDPS 289


>SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)
          Length = 391

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 236 DVFSSTTNFXLWLAIMFLYDYRRFIYVDKLSIFSC---XYYVSCLLKWNLGIXINK 78
           D +S  T    W    F+  Y  FI VD+ S+F+C       +C+ +W++   +++
Sbjct: 58  DRWSVFTCVDRWSVFTFVDCYSVFICVDRWSLFTCVDRWSVFTCVDRWSVFTCVDR 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,239,951
Number of Sequences: 59808
Number of extensions: 130635
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)