Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0348
(399 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 99 3e-20
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 97 8e-20
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 83 1e-15
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 79 3e-14
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 77 1e-13
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 75 7e-13
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 67 1e-10
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 63 2e-09
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 61 9e-09
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 61 9e-09
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 56 3e-07
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 48 7e-05
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 44 8e-04
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 44 8e-04
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 44 8e-04
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 43 0.002
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 42 0.006
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 38 0.096
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 36 0.29
UniRef50_A6EMV9 Cluster: Putative uncharacterized protein; n=1; ... 35 0.67
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 35 0.67
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 34 0.89
UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA... 32 3.6
UniRef50_Q1QYI2 Cluster: Uroporphyrin-III C-methyltransferase; n... 31 6.3
UniRef50_Q5QWZ5 Cluster: Uncharacterized conserved secreted prot... 31 8.3
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 99.1 bits (236), Expect = 3e-20
Identities = 56/109 (51%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Frame = +1
Query: 67 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG 246
++ ARPL+SVYSEK E+ G LP VFKAPIRPD VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 247 HQTVPNH---GVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
HQT G +P R QGAFGNMC G MF PT
Sbjct: 60 HQTSAESWGTGRAVARIPRVRGGGT---HRSGQGAFGNMCRGGRMFAPT 105
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 97.5 bits (232), Expect = 8e-20
Identities = 56/111 (50%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Frame = +1
Query: 61 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKX 240
MSL ARPLVSVY+EK+E + LP VFKAPIRPD VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSEL 60
Query: 241 AGHQTVPNH---GVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
AGHQT G +P R QGAFGNMC G MF PT
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGT---HRSGQGAFGNMCRGGRMFAPT 108
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 83.4 bits (197), Expect = 1e-15
Identities = 50/104 (48%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = +1
Query: 76 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQT 255
+RP VSV S T G PLP VF +PIRPD V VH M+KN RQPY VS+ AGHQT
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQT 61
Query: 256 -VPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
+ G + R S Q AFGNMC G MF PT
Sbjct: 62 SAESWGTGRAVARIPRVSGGGTH-RAGQAAFGNMCRSGRMFAPT 104
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 79.0 bits (186), Expect = 3e-14
Identities = 48/104 (46%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +1
Query: 76 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG-HQ 252
ARP VSVYS S++V G PLP VF APIR D V VH +M+KNSRQ Y V++ +G +
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNH 61
Query: 253 TVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
+ + G + R S GAFGNMC G MF PT
Sbjct: 62 SAHSWGTGRAVARIPRISGGGTSTS-GAGAFGNMCRGGRMFAPT 104
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 77.0 bits (181), Expect = 1e-13
Identities = 46/100 (46%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +1
Query: 94 VYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQTVPNH-- 267
VY++KSE + LP VF+AP+RPD V+ VH + KN RQPY VS AGHQT
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 268 -GVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
G +P R QGAFGNMC G MF PT
Sbjct: 186 TGRAVARIPRVRGGGT---HRSGQGAFGNMCRGGRMFAPT 222
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 74.5 bits (175), Expect = 7e-13
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +1
Query: 67 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG 246
++ ARP+VSV+ T ++ PLP VF +P+R D V V +MSKN RQ Y VS AG
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAG 60
Query: 247 HQ-TVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXP 381
HQ + + G + R S QGAFGNMC G MF P
Sbjct: 61 HQHSAESWGTGRAVARIPRVSASGTS-RSGQGAFGNMCRGGHMFSP 105
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 66.9 bits (156), Expect = 1e-10
Identities = 39/104 (37%), Positives = 52/104 (50%)
Frame = +1
Query: 73 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQ 252
V RP+VSV+S +E G+ +P VF P+R D V+ VH +MSKN RQ Y +S+ +G+Q
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQ 60
Query: 253 TVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
T L Q A+ N C G MF PT
Sbjct: 61 TSARSWGTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPT 104
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 63.3 bits (147), Expect = 2e-09
Identities = 37/106 (34%), Positives = 50/106 (47%)
Frame = +1
Query: 67 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG 246
++ RPL +VY + V G + +P VF+ PIR D + + +MSKN R PY V AG
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAG 59
Query: 247 HQTVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
++T + Q AFGNMC G MF PT
Sbjct: 60 YETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPT 105
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 60.9 bits (141), Expect = 9e-09
Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +1
Query: 82 PLVSVYSEKSET-VQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQ-T 255
PLVSV+S T V PLP VF+ PIRPD V+ VH +++KN RQ + V+ AG Q +
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHS 64
Query: 256 VPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXP 381
+ G + R S Q AFGN C G M P
Sbjct: 65 AESWGTGRAVARIPRVSGSGTH-RSGQAAFGNQCRKGRMSLP 105
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 60.9 bits (141), Expect = 9e-09
Identities = 40/105 (38%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = +1
Query: 79 RPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQTV 258
RP VSV++ GA +P VF AP+R D V VH +MSKN RQ Y VSK +G+QT
Sbjct: 4 RPEVSVHNATDGERVGATL-MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTS 62
Query: 259 PNH---GVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
G +P + Q A+ N C G M+ PT
Sbjct: 63 ARSWGTGRAMARVPRVKGGGT---HRAGQAAYANFCRAGGMYAPT 104
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 55.6 bits (128), Expect = 3e-07
Identities = 40/105 (38%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = +1
Query: 76 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG--H 249
+RP V++Y + + LP VF APIR D V+ V+ + SKN+RQP VS AG H
Sbjct: 3 SRPFVTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQH 62
Query: 250 QTVP-NHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXP 381
+ G +P S QGAFGNM G MF P
Sbjct: 63 SAISWGTGRAVARIPRISGSG---SGRNGQGAFGNMTRKGHMFSP 104
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 48.0 bits (109), Expect = 7e-05
Identities = 33/101 (32%), Positives = 42/101 (41%)
Frame = +1
Query: 82 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQTVP 261
P V V+ V A P P VF P+RPD +N VH + K R PY VS+ AG Q
Sbjct: 3 PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60
Query: 262 NHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
+ P + + GA+ N G M PT
Sbjct: 61 HSWGPGRAVARLPRKHGGI------GAYANFARGGHMAHPT 95
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 44.4 bits (100), Expect = 8e-04
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 85 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQ-TVP 261
L +VY+ + A P + +PIRPD V+ VH++++KN RQP+ AGHQ +
Sbjct: 7 LTTVYNTDGKARDTTAVPSVIRY-SPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAE 65
Query: 262 NHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXP 381
+ G + R S Q AF N G M+ P
Sbjct: 66 SWGTGRAVARVPRISGSGTSRN-GQAAFANSARGGHMYSP 104
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 44.4 bits (100), Expect = 8e-04
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = +1
Query: 73 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQ 252
++R V+V +++ + + + LP VF PIR + V +V+V+++KN++QP+ AG +
Sbjct: 1 MSRQTVNVLTQEGQ--KASTIELPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKK 58
Query: 253 TVP---NHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXP 381
G +P S QGA+ N C G F P
Sbjct: 59 VSAISWGTGRAKACVPRVNGSG---SNRNGQGAYANFCRGGHRFNP 101
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 44.4 bits (100), Expect = 8e-04
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +1
Query: 88 VSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQ-TVPN 264
++ Y TV+ LP VF PIR D V + +RQPY VSK AG Q + +
Sbjct: 5 INCYEADGVTVKKTLD-LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAES 63
Query: 265 HGVPDVL--LPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
G + +P + QGAF N C G M PT
Sbjct: 64 WGTGRAIARVPRVKGGGT---RRAGQGAFANFCRKGRMAHPT 102
Score = 39.1 bits (87), Expect = 0.031
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 252 NSAXSWGTGRAVARIPXXXGXGTHWSXSG 338
+SA SWGTGRA+AR+P G GT + G
Sbjct: 59 HSAESWGTGRAIARVPRVKGGGTRRAGQG 87
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +3
Query: 255 SAXSWGTGRAVARIPXXXGXGTHWSXSGCL 344
SA SWGTGRAV+R+P G GTH S G +
Sbjct: 58 SAVSWGTGRAVSRVPRVPGSGTHRSGQGAI 87
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 41.5 bits (93), Expect = 0.006
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = +3
Query: 255 SAXSWGTGRAVARIPXXXGXGTH 323
SA SWGTGRAVARIP G GTH
Sbjct: 39 SAESWGTGRAVARIPRVSGGGTH 61
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 37.5 bits (83), Expect = 0.096
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 172 DXVNDVHVSMSKNSRQPYCVSKXAGHQT 255
D VN VH ++ KN QPY VS+ AG+QT
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQT 52
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 35.9 bits (79), Expect = 0.29
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 255 SAXSWGTGRAVARIPXXXGXGTHWSXSGCL 344
SA SWG GR +ARIP G GT + G L
Sbjct: 64 SAKSWGPGRGLARIPRIKGSGTRKAGQGAL 93
>UniRef50_A6EMV9 Cluster: Putative uncharacterized protein; n=1;
unidentified eubacterium SCB49|Rep: Putative
uncharacterized protein - unidentified eubacterium SCB49
Length = 520
Score = 34.7 bits (76), Expect = 0.67
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Frame = +1
Query: 70 SVARP-LVSVYSEKSETV-QGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXA 243
++A+P ++ ++K V +G + P+ F A I P VN +SK S Y ++ +
Sbjct: 322 TIAKPNSATIAADKMNVVYRGVSNPMTIDF-AGIDPSKVNAKAAGLSKKSGTSYTMTPGS 380
Query: 244 GHQ-------TVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGN 351
G + T+PN G P FR + P G +G GN
Sbjct: 381 GREVTISVNATLPNGGGPVSDKATFRIKDIPRPTGTIRGEDGN 423
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 34.7 bits (76), Expect = 0.67
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 124 GAAKPLPFVFKAPIRPDXVNDVHVSMSKN 210
GA+ +P VF +PIR D VN VH ++KN
Sbjct: 15 GASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 34.3 bits (75), Expect = 0.89
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 82 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQT 255
P+ ++ E+ +TV+ LP F+ P+R D + ++ N RQPY AG +T
Sbjct: 4 PVFNLEGEEVDTVE-----LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRT 56
>UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA,
variant 1; n=2; Roseiflexus|Rep: HAD-superfamily
hydrolase, subfamily IA, variant 1 - Roseiflexus sp.
RS-1
Length = 223
Score = 32.3 bits (70), Expect = 3.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 148 RTGGA-WLHPAPSHSSLNTPTLKVGLPIDSFRYFSEAIPP 32
R GG WLH A SH P +++GLP+ E +PP
Sbjct: 163 RIGGLRWLHAAQSHFHDVVPAVQMGLPVAWINRKHEPLPP 202
>UniRef50_Q1QYI2 Cluster: Uroporphyrin-III C-methyltransferase; n=1;
Chromohalobacter salexigens DSM 3043|Rep:
Uroporphyrin-III C-methyltransferase - Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 266
Score = 31.5 bits (68), Expect = 6.3
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 178 VNDVHVSMSKNSRQPYCVSKXAGHQTVPNHGVPDVLLPEFRXSXVVVPI-GPSQGAFGNM 354
V D ++M SR+ Y V K GH +VP + +L R VV + G G FG M
Sbjct: 55 VGDDILAMIPPSRERYYVGKARGHHSVPQAEIGALLARLAREGKSVVRLKGGDPGIFGRM 114
>UniRef50_Q5QWZ5 Cluster: Uncharacterized conserved secreted protein;
n=12; Proteobacteria|Rep: Uncharacterized conserved
secreted protein - Idiomarina loihiensis
Length = 1058
Score = 31.1 bits (67), Expect = 8.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 382 WGRTYXHXDTCYRRHPEXDQWVPXPXXXGIRATARPVPHD 263
WG Y + +T +HP+ Q+VP G PH+
Sbjct: 890 WGENYWYAETDVWKHPKLTQYVPMEFLVGKAMRREKAPHN 929
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,915,421
Number of Sequences: 1657284
Number of extensions: 6023018
Number of successful extensions: 13372
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13342
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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