Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0348
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   2.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   3.4  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 141 PVRIQGAHTSGXXQ*CSRFYVQELEAAL 224
           PVRI G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 352 CYRRHPEXDQWVPXP 308
           CYR +P  +QW   P
Sbjct: 259 CYRPYPVYNQWWSGP 273



 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +3

Query: 240 GWSPNSAXSWGTGRAVARIPXXXGXGTHW 326
           GWSP       +   +   P     G+HW
Sbjct: 86  GWSPAGHEEAQSPHRIYMHPESPSKGSHW 114


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 127 HPAPSHSSLNTPTL 86
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,334
Number of Sequences: 336
Number of extensions: 1361
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)