Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0348
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    92   3e-20
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    91   6e-20
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   1.9  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   2.5  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   3.3  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   4.3  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    24   7.6  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   10.0 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   10.0 

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 91.9 bits (218), Expect = 3e-20
 Identities = 50/106 (47%), Positives = 58/106 (54%)
 Frame = +1

Query: 67  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG 246
           ++ ARP VS+YS K  +V      LPFVFKAPIRPD V  VH +++KN RQPY VS+ AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 247 HQTVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
           HQT          L               Q AFGNMC  G MF PT
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPT 105


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 91.1 bits (216), Expect = 6e-20
 Identities = 49/106 (46%), Positives = 58/106 (54%)
 Frame = +1

Query: 67  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG 246
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPD V  VH +++KN RQPY VS+ AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 247 HQTVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
           HQT          L               Q AFGNMC  G MF PT
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPT 105


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 128 APCTVSLFSEYTDTKGRATDRLISLL 51
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 141 PVRIQGAHTSGXXQ*CSRFYVQELEAALLRXQ 236
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 272 YRTCCCPNSXXPWXWYPLVXLR 337
           +R CCC      W  YP + L+
Sbjct: 20  FRLCCCSPQTSHWCKYPALCLK 41


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 117 GAGCSQAPPVRIQGAHTSGXXQ*CSRFYVQELE 215
           G G S  PP  I+G   S   +   RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 185 SLTXSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRL 63
           SL+ S R+GAL++  +   + C   +    T  +G + DR+
Sbjct: 325 SLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRI 365


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 55  SEMSLSVARPLVSVYSE 105
           SEMSL++A P+ + Y+E
Sbjct: 96  SEMSLTIALPISAAYTE 112


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 103 LNTPTLKVGLPIDSFRYFSEAIPPKYTL 20
           +N PT+  G P  S      +IPP + +
Sbjct: 235 MNNPTIPKGTPSTSIEGAKTSIPPSHAM 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,422
Number of Sequences: 5004
Number of extensions: 22241
Number of successful extensions: 58
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)