Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0348
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 74 5e-14
07_01_0578 + 4295386-4296489,4297394-4297507 72 2e-13
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.11
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.19
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 1.0
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 29 1.0
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 1.4
03_01_0147 - 1170481-1171260,1171332-1171511 28 3.1
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 4.1
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 27 4.1
09_06_0153 - 21243108-21245660 27 5.5
05_04_0068 + 17635693-17637204 27 7.2
03_02_0941 - 12589537-12590109,12590196-12590390,12590521-12590718 27 7.2
11_01_0074 + 582210-582434,582521-582712,582785-582950,584013-58... 26 9.5
03_03_0084 + 14337998-14338255,14338372-14339133 26 9.5
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 73.7 bits (173), Expect = 5e-14
Identities = 45/106 (42%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +1
Query: 70 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAG 246
+ ARPLVSV + E A +P V +APIRPD V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 247 HQTVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
HQT + QGAFGNMC G MF PT
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT 108
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 71.7 bits (168), Expect = 2e-13
Identities = 44/104 (42%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = +1
Query: 79 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQ 252
RPLVSV + + + T ++ L VF+AP+RPD V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 253 TVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
T + QGAFGNMC G MF PT
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT 109
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +3
Query: 42 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 42 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 42 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 213 EAALLRXQGGWSPNSAXSWGTGRAV 287
EAALLR G W+ + WG G V
Sbjct: 367 EAALLRAAGDWARGAGQRWGVGDVV 391
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 42 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 36 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 151 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 59
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/71 (26%), Positives = 27/71 (38%)
Frame = +1
Query: 64 SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXA 243
S + PL + S KS + ++ LP V P + +HV K S P C S+
Sbjct: 498 SRDMVPPLPPLPSMKSPSESWLSRALPSVSSNPPATSFLG-IHVQHKKQSPPPRCSSRAP 556
Query: 244 GHQTVPNHGVP 276
H P
Sbjct: 557 AKLVADGHARP 567
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 128 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 6
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>05_04_0068 + 17635693-17637204
Length = 503
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 198 YVQELEAALLRXQGGWSPNSA 260
Y+QE+ + + GGWSP+S+
Sbjct: 20 YLQEIRSLAVDSAGGWSPSSS 40
>03_02_0941 - 12589537-12590109,12590196-12590390,12590521-12590718
Length = 321
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Frame = +3
Query: 60 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF------YVQELEAA 221
N SI +PT ++ G S V + GAHT G + C+ F L+A+
Sbjct: 155 NSSIPAPTLNLDGLVSSFAAQGLSVQDLVLLSGAHTLGFSR-CTNFRDRLYNETATLDAS 213
Query: 222 LLRXQGGWSPNSA 260
L GG P +A
Sbjct: 214 LAASLGGTCPRTA 226
>11_01_0074 +
582210-582434,582521-582712,582785-582950,584013-584404
Length = 324
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 42 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
ASL N +I PT + G SQ V + G+HT G + C+ F
Sbjct: 157 ASLSGANNNIPPPTSGLANLTSLFAAQGLSQKDMVALSGSHTIGQAR-CTNF 207
>03_03_0084 + 14337998-14338255,14338372-14339133
Length = 339
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 78 PTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRFYVQELEAA 221
PTF++G G S V + GAHT G CS F L A
Sbjct: 183 PTFNLGQLVANFAAKGLSVEDMVVLSGAHTIGLSH-CSSFVSDRLAVA 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,615,858
Number of Sequences: 37544
Number of extensions: 184886
Number of successful extensions: 420
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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